miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;CAAE01015044.1/472022-472113 99883:Tetraodon
nigroviridis
Length = 92
Score = 117 bits (59), Expect = 3e-26
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 13 gaggctgtgtgatatgtttgatattcggttgttctcctgcgttttcacgtcaactaaata 72
||||||||||||||||||||||||||||||||||| | || ||| |||||||||||||
Sbjct: 6 gaggctgtgtgatatgtttgatattcggttgttcttgttcgctttgtcgtcaactaaata 65
Query: 73 tcagacatattcctacagattctggca 99
||||||||||||||||||| |||||||
Sbjct: 66 tcagacatattcctacagagtctggca 92
>RF00672;mir-190;BAAF04125730.1/5227-5318 8090:Oryzias latipes
(Japanese medaka)
Length = 92
Score = 115 bits (58), Expect = 1e-25
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 9 gctagaggctgtgtgatatgtttgatattcggttgttctcctgcgttttcacgtcaacta 68
||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||
Sbjct: 2 gctagaggctgtgtgatatgtttgatattcggttgttcttgtgcttcatcatgtcaacta 61
Query: 69 aatatcagacatattcctacagattctggc 98
||||||||||||||||| ||||| ||||||
Sbjct: 62 aatatcagacatattccaacagactctggc 91
>RF00672;mir-190;CAAB01003167.1/3482-3391 31033:Takifugu rubripes
Length = 92
Score = 79.8 bits (40), Expect = 6e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 16 gctgtgtgatatgtttgatattcggttgttctcctgcgttttcacgtcaactaaatatca 75
||||| |||||||||||||||||||||||| ||| || || |||||||||||||||
Sbjct: 9 gctgtttgatatgtttgatattcggttgtttatgtgctttgtcctgtcaactaaatatca 68
Query: 76 gacatattcctacaga 91
||||||||||||||||
Sbjct: 69 gacatattcctacaga 84
>RF00672;mir-190;CR361564.27/60035-60124 7955:Danio rerio
(zebrafish)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgatatgtttgatattcggttgttctcctgcgttttcacgtcaactaaatatcagaca 79
|||||||||||||||||||||||| | || | | ||| |||||||||||||||||||
Sbjct: 13 tgtgatatgtttgatattcggttgctttcttta--tatcatgtcaactaaatatcagaca 70
Query: 80 tattccta 87
||||||||
Sbjct: 71 tattccta 78
>RF00672;mir-190;AAPN01024655.1/497-583 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattaggttgtt 38
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 aatatcagacatattcctacag 90
||||||||||||||||||||||
Sbjct: 56 aatatcagacatattcctacag 77
>RF00672;mir-190;AAFR03052180.1/90862-90947 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAGV020286131.1/1034-1117 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 84
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAQQ01331788.1/1206-1291 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAHY01028992.1/83185-83270 10090:Mus musculus
(house mouse)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAIY01445479.1/883-798 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAVX01176080.1/200-287 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattaggttgtt 38
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
||||||||||| ||||||||||||||||
Sbjct: 52 caactaaatattagacatattcctacag 79
