miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00100;7SK;AL611982.26/127743-128050 10090:Mus musculus (house
mouse)
Length = 308
Score = 60.0 bits (30), Expect = 5e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 43 aactcacagagatctgcctgcctctgcctcccgagtgctgggatta 88
|||||||||||||||||||| || ||||| | ||||||||||||||
Sbjct: 307 aactcacagagatctgcctggctttgccttctgagtgctgggatta 262
>RF00017;Metazoa_SRP;AADA01310983.1/9423-9705 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 50.1 bits (25), Expect = 5e-06
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Minus
Query: 53 gatctgcctgcctctgcctccc-gagtgctgggatta 88
|||||||| ||||||||||||| ||||||||||||||
Sbjct: 227 gatctgcccgcctctgcctcccagagtgctgggatta 191
>RF00100;7SK;AABR04002105.1/18421-18740 10116:Rattus norvegicus
(Norway rat)
Length = 320
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 46 tcacagagatctgcctgcctctgcctcccgagt 78
|||||||||||||||| ||||||||||| ||||
Sbjct: 320 tcacagagatctgccttcctctgcctcctgagt 288
>RF00100;7SK;CAAA01155083.1/245-554 10090:Mus musculus (house mouse)
Length = 310
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 50 agagatctgcctgc--ctctgcctcccgagtgctgggattaaag 91
|||||||||||||| |||||||||| ||||||| |||||||||
Sbjct: 304 agagatctgcctgcctctctgcctcctgagtgctaggattaaag 261
>RF00100;7SK;CAAA01138734.1/41922-41649 10090:Mus musculus (house
mouse)
Length = 274
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 61 tgcctctgcctcccgagtgctgggattaaag 91
||||||||||||| |||||||| ||||||||
Sbjct: 195 tgcctctgcctcctgagtgctgagattaaag 165
>RF00017;Metazoa_SRP;AADD01024744.1/29111-29392 9606:Homo sapiens
(human)
Length = 282
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 53 gatctgcctgcctctgcctccc 74
||||||||||||||||||||||
Sbjct: 61 gatctgcctgcctctgcctccc 40
>RF00100;7SK;AABR04018170.1/31400-31722 10116:Rattus norvegicus
(Norway rat)
Length = 323
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 26 agaccaggctggcctcgaactcacagagat 55
|||||||| |||||| ||||||||||||||
Sbjct: 306 agaccaggttggccttgaactcacagagat 277
