miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttca 139
|||||||||||||||||||||||| |||||||
Sbjct: 86 cgctatccatcctgagtttcatggcttcttca 117
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 tggaagaatctgtatagctcaagagggatagcgcca 45
|||||||||||||| |||||| ||||||||||||||
Sbjct: 1 tggaagaatctgtaaagctcaggagggatagcgcca 36
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttct 136
|||||||||||||||||||||||| ||||
Sbjct: 72 cgctatccatcctgagtttcatggcttct 100
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttc 138
|||||||||||||||||||||| ||||||||
Sbjct: 106 cgctatccatcctgagtttcattggttcttc 136
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttc 138
|||||||||||||||||||||| ||||||||
Sbjct: 93 cgctatccatcctgagtttcattggttcttc 123
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 gaagaatctgtatagctcaagagggatagcgcca 45
|||||||||||| |||||| ||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgcca 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttc 138
||||||| ||||||||||||| |||||||||
Sbjct: 101 cgctatctatcctgagtttcacgggttcttc 131
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 gaagaatctgtatagctcaagagggatagcgcca 45
|||||||||||| |||||| ||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgcca 36
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 gaagaatctgtatagctcaagagggatagcgcca 45
|||||||||||| |||||| ||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgcca 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttc 138
|||||||||||||||||||||| || |||||
Sbjct: 67 cgctatccatcctgagtttcattggctcttc 97
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttc 138
|||||||||||||||||| ||||| ||||||
Sbjct: 78 cgctatccatcctgagttccatggcttcttc 108
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 tggaagaatctgtatagctcaagagggatagcgcc 44
||||||||||||| |||||| |||||||||||||
Sbjct: 1 tggaagaatctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttc 138
||||||||||||||||||||| ||||||||
Sbjct: 92 cgctatccatcctgagtttcacaggttcttc 122
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 cgctatccatcctgagtttcatgggttcttc 138
||||||| ||||||||||||| |||||||||
Sbjct: 114 cgctatctatcctgagtttcacgggttcttc 144
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 gaagaatctgtatagctcaagagggatagcgcca 45
||||||||||| |||||| ||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgcca 36
