miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya (papaya)
Length = 122
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 101 gtcggccggcaagttgttcttggctacattttgctctct 139
||||||||||||||||||||||||||||| ||||||||
Sbjct: 84 gtcggccggcaagttgttcttggctacatcgtgctctct 122
>RF00645;MIR169_2;AARH01007603.1/205939-205816 3694:Populus
trichocarpa
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 106 ccggcaagttgttcttggctacattt 131
||||||||||||||||||||||||||
Sbjct: 91 ccggcaagttgttcttggctacattt 116
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 ccggcaagttgttcttggctacattttgct 135
||||||||||||||||| ||||||||||||
Sbjct: 59 ccggcaagttgttcttgactacattttgct 88
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 30 aaagtagagtgcatccaaggatgacttgccgg 61
||||| ||||||| ||||||||||||||||||
Sbjct: 1 aaagtggagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 106 ccggcaagttgttcttggctacatt 130
|||||||||||||||||||||||||
Sbjct: 72 ccggcaagttgttcttggctacatt 96
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 32 agtagagtgcatccaaggatgacttgccggca 63
|||||| |||| ||||||||||||||||||||
Sbjct: 3 agtagaatgcagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 106 ccggcaagttgttcttggctacattttgctct 137
|||||||||||||| |||||||||| ||||||
Sbjct: 64 ccggcaagttgttcctggctacattctgctct 95
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 30 aaagtagagtgcatccaaggatgacttgccggca 63
||||| || |||| ||||||||||||||||||||
Sbjct: 1 aaagtggattgcagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AC189369.2/97764-97940 51351:Brassica rapa
subsp. pekinensis
Length = 177
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 30 aaagtagagtgcatccaaggatgacttgccg 60
||||||| ||||| |||||||||||||||||
Sbjct: 1 aaagtagtgtgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
(thale cress)
Length = 215
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 30 aaagtagagtgcatccaaggatgacttgccg 60
||||||| ||||| |||||||||||||||||
Sbjct: 1 aaagtagtgtgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 37 agtgcatccaaggatgacttgccggca 63
|||||| ||||||||||||||||||||
Sbjct: 10 agtgcagccaaggatgacttgccggca 36
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 37 agtgcatccaaggatgacttgccggca 63
|||||| ||||||||||||||||||||
Sbjct: 8 agtgcagccaaggatgacttgccggca 34
>RF00645;MIR169_2;ABIM01024501.1/10420-10301 3649:Carica papaya
(papaya)
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 gagtgcatccaaggatgacttgccgg 61
||||||| ||||||||||||||||||
Sbjct: 7 gagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 gtgcatccaaggatgacttgccggca 63
||||| ||||||||||||||||||||
Sbjct: 11 gtgcagccaaggatgacttgccggca 36
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 agtgcatccaaggatgacttgccggc 62
|||||| |||||||||||||||||||
Sbjct: 10 agtgcagccaaggatgacttgccggc 35
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 gagtgcatccaaggatgacttgccgg 61
||||||| ||||||||||||||||||
Sbjct: 7 gagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 gagtgcatccaaggatgacttgccgg 61
||||||| ||||||||||||||||||
Sbjct: 7 gagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 32 agtagagtgcatccaaggatgacttgccgg 61
|||||| |||| ||||||||||||||||||
Sbjct: 3 agtagaatgcagccaaggatgacttgccgg 32
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 106 ccggcaagttgttcttggctacattttgctctct 139
|||||||||||| |||||||||||| |||||||
Sbjct: 55 ccggcaagttgtccttggctacattgggctctct 88
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 gtgcatccaaggatgacttgccggca 63
||||| ||||||||||||||||||||
Sbjct: 11 gtgcagccaaggatgacttgccggca 36
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 cggcaagttgttcttggctaca 128
||||||||||||||||||||||
Sbjct: 83 cggcaagttgttcttggctaca 104
>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 ggcaagttgttcttggctacat 129
||||||||||||||||||||||
Sbjct: 88 ggcaagttgttcttggctacat 109
