miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01028;mir-633;ABQO011061954.1/360-281 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 66 ctattattaacctcattttacagctgtggaaactgaggcacagaga 111
|||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 50 ctattattaaccccattttacagatgaagaaactgaggcacagaga 5
>RF01028;mir-633;AAEX02029535.1/123386-123466 9615:Canis lupus
familiaris (dog)
Length = 81
Score = 56.0 bits (28), Expect = 1e-07
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 65 actattattaacctca-ttttacagctgtggaaactgaggcacagaga 111
|||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct: 52 actattattaccctcaattttacagatgaggaaactgaggcacagaga 5
>RF01028;mir-633;ABQO010175161.1/653-732 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 45 aacagccctgggacgcaggcactattattaacctcattttacagctgtggaaactgagg 103
|||| |||||||| ||||| ||||||| | ||||||||||||| || |||||||||||
Sbjct: 71 aacaaccctgggaggcaggtgctattatgatcctcattttacagatgaggaaactgagg 13
>RF01028;mir-633;ABQO011200409.1/194-115 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 66 ctattattaacctcattttacagctgtggaaactgaggc 104
||||||||| || ||||||||||||| ||||||||||||
Sbjct: 50 ctattattatccccattttacagctgaggaaactgaggc 12
>RF01028;mir-633;AAFR03029413.1/88044-88123 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 66 ctattattaacctcattttacagctgtggaaactgaggc 104
|||||||||| |||||||||||| || ||||||||||||
Sbjct: 50 ctattattaaactcattttacagatgaggaaactgaggc 12
>RF01028;mir-633;ABQO010383007.1/1459-1380 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 66 ctattattaacctcattttacagctgtggaaactgaggcacagaga 111
||||||||| || ||||||||||||| |||||||||||| |||||
Sbjct: 50 ctattattatccccattttacagctgaagaaactgaggcaaagaga 5
>RF01028;mir-633;ABQO011030935.1/616-695 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 78 tcattttacagctgtggaaactgaggcacagaga 111
||||||||||| || |||||||||||||||||||
Sbjct: 38 tcattttacagatgaggaaactgaggcacagaga 5
>RF01028;mir-633;ABQO010371174.1/1710-1631 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 79 cattttacagctgtggaaactgaggcacagaga 111
|||||||||| || |||||||||||||||||||
Sbjct: 37 cattttacagatgaggaaactgaggcacagaga 5
>RF01028;mir-633;AAFR03020084.1/48475-48554 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 65 actattattaacctcattttacagctgtggaaactgaggca 105
|||||||||| ||| ||||||||| || |||||||||||||
Sbjct: 51 actattattatccttattttacagatgaggaaactgaggca 11
>RF00985;mir-640;ABQO010050764.1/4262-4166 9315:Macropus eugenii
(tammar wallaby)
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 65 actattattaacctcattttacagctgtggaaactgaggca 105
|||||||||| || |||||||||| || |||||||||||||
Sbjct: 72 actattattatccccattttacagttgaggaaactgaggca 32
>RF01028;mir-633;ABQO010023350.1/4125-4204 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 65 actattattaacctcattttacagctgtggaaactgaggc 104
|||| ||||| ||||||||||||| || ||||||||||||
Sbjct: 51 actactattatcctcattttacagatgaggaaactgaggc 12
>RF01028;mir-633;ABQO010858483.1/1115-1036 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 52 ctgggacgcaggcactattattaacctcattttacagctgtggaaactgagg 103
|||||| | ||| ||| |||||| ||||||||||||| || |||||||||||
Sbjct: 64 ctgggaggtaggtacttttattatcctcattttacagatgaggaaactgagg 13
>RF01028;mir-633;AAFR03021424.1/44562-44483 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 64 cactattattaacctcattttacagctgtggaaactgaggcacagaga 111
||||||||||| |||||||||||| || ||||| ||||||| |||||
Sbjct: 52 cactattattatgctcattttacagatgaggaaattgaggcaaagaga 5
>RF01028;mir-633;ABQO010684938.1/1146-1225 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 65 actattattaacctcattttacagctgtggaaactgaggcacagaga 111
|||||||||| | ||||||||||| | ||||||||||||| |||||
Sbjct: 51 actattattattcccattttacagccgaggaaactgaggcagagaga 5
>RF01028;mir-633;ABQO010866823.1/1615-1536 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 66 ctattattaacctcattttacagctgtggaaactgaggc 104
||||||||| | |||||||| ||||| ||||||||||||
Sbjct: 50 ctattattatcttcattttaaagctgaggaaactgaggc 12
>RF01028;mir-633;ABQO010253369.1/3298-3377 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 65 actattattaacctcattttacagctgtggaaactgaggcacagaga 111
|||||||||| | ||||||||||| || |||| ||||||||| ||||
Sbjct: 51 actattattatcttcattttacagatgaggaacctgaggcaccgaga 5
>RF01028;mir-633;ABRT010412741.1/306-389 9478:Tarsius syrichta
(Philippine tarsier)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 73 taacctcattttacagctgtggaaactgaggcacagaga 111
||||| ||||||||||| |||||||||||||||||||
Sbjct: 43 taaccacattttacagccaaggaaactgaggcacagaga 5
>RF00985;mir-640;ABQO010850477.1/1908-2001 9315:Macropus eugenii
(tammar wallaby)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 79 cattttacagctgtggaaactgaggca 105
||||||||||||| |||||||||||||
Sbjct: 58 cattttacagctgaggaaactgaggca 32
>RF00985;mir-640;AAFR03026621.1/50879-50976 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 69 ttattaacctcattttacagctgtggaaactgagg 103
|||||| ||||||||||||| || |||||||||||
Sbjct: 68 ttattatcctcattttacagttgaggaaactgagg 34
>RF01028;mir-633;ABQO010185844.1/592-513 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 60 caggcactattattaacctcattttacagctgtggaaactgaggca 105
|||| |||||||||| || ||||||||| ||| ||||||||||||
Sbjct: 56 caggtactattattatccccattttacaactgaagaaactgaggca 11
>RF01028;mir-633;ABQO010180757.1/1097-1019 9315:Macropus eugenii
(tammar wallaby)
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 82 tttacagctgtggaaactgaggcacagaga 111
||||||| || |||||||||||||||||||
Sbjct: 34 tttacagatgaggaaactgaggcacagaga 5
>RF01028;mir-633;ABBA01056492.1/35462-35541 9606:Homo sapiens
(human)
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 66 ctattattaacctcattttacagctgtggaaactgaggcacagaga 111
||||| ||| || ||||||||| || |||||||||||||||||||
Sbjct: 50 ctatttttatccccattttacaaatgaggaaactgaggcacagaga 5
