miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9Z142|TMM33_RAT Transmembrane protein 33 OS=Rattus norvegicus
GN=Tmem33 PE=2 SV=1
Length = 247
Score = 40.0 bits (92), Expect(2) = 2e-05
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 1 HETTSFYQRAILATALTSALEVYPKITH 84
HE SFYQRA+LA ALTSAL ++ ++ H
Sbjct: 49 HEAASFYQRALLANALTSALRLHQRLPH 76
Score = 27.3 bits (59), Expect(2) = 2e-05
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 59 LRCTQRLHIFHSKRGFLVQALL*DTSNSWRYS 154
LR QRL F R FL QALL D+ + YS
Sbjct: 68 LRLHQRLPHFQLSRAFLAQALLEDSCHYLLYS 99
>sp|Q9CR67|TMM33_MOUSE Transmembrane protein 33 OS=Mus musculus
GN=Tmem33 PE=2 SV=1
Length = 247
Score = 40.0 bits (92), Expect(2) = 2e-05
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 1 HETTSFYQRAILATALTSALEVYPKITH 84
HE SFYQRA+LA ALTSAL ++ ++ H
Sbjct: 49 HEAASFYQRALLANALTSALRLHQRLPH 76
Score = 27.3 bits (59), Expect(2) = 2e-05
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 59 LRCTQRLHIFHSKRGFLVQALL*DTSNSWRYS 154
LR QRL F R FL QALL D+ + YS
Sbjct: 68 LRLHQRLPHFQLSRAFLAQALLEDSCHYLLYS 99
>sp|P57088|TMM33_HUMAN Transmembrane protein 33 OS=Homo sapiens
GN=TMEM33 PE=1 SV=2
Length = 247
Score = 40.0 bits (92), Expect(2) = 2e-05
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 1 HETTSFYQRAILATALTSALEVYPKITH 84
HE SFYQRA+LA ALTSAL ++ ++ H
Sbjct: 49 HEAASFYQRALLANALTSALRLHQRLPH 76
Score = 27.3 bits (59), Expect(2) = 2e-05
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 59 LRCTQRLHIFHSKRGFLVQALL*DTSNSWRYS 154
LR QRL F R FL QALL D+ + YS
Sbjct: 68 LRLHQRLPHFQLSRAFLAQALLEDSCHYLLYS 99
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8WTZ3|YS049_HUMAN Zinc finger protein ENSP00000375192 OS=Homo
sapiens PE=2 SV=1
Length = 238
Score = 50.1 bits (118), Expect = 4e-06
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -2
Query: 129 FFFFLRWSLTLLPRVECHGGISAHCN 52
FFFFL+WSLTL P++EC+G IS HCN
Sbjct: 92 FFFFLKWSLTLSPKLECNGAISVHCN 117
>sp|Q9H6D5|WBS23_HUMAN Putative Williams-Beuren syndrome chromosomal
region 23 protein OS=Homo sapiens GN=WBSCR23 PE=5 SV=1
Length = 173
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -2
Query: 132 FFFFFLRWSLTLLPRVECHGGISAH 58
FFFFF RWSLTLLPR+EC G +SAH
Sbjct: 149 FFFFFFRWSLTLLPRLECSGAMSAH 173
