miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00952;mir-650;AK129585.1/1-79 9606:Homo sapiens (human)
Length = 79
Score = 89.7 bits (45), Expect = 3e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 2 tctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctcac 61
|||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||
Sbjct: 6 tctcaggaggcagcgctctcgggacgtctccgccatggcctgggctctgctgctcctcac 65
Query: 62 c 62
|
Sbjct: 66 c 66
>RF00952;mir-650;AANU01210640.1/17305-17211 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 83.8 bits (42), Expect = 2e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 1 gtctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctca 60
|||||||||| ||| ||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 11 gtctcaggagacagtgctgtcgggacgtctccaccatggcctgggctctgctcctcctca 70
Query: 61 cc 62
||
Sbjct: 71 cc 72
>RF00952;mir-650;AAPE01597063.1/4995-4901 59463:Myotis lucifugus
(little brown bat)
Length = 95
Score = 79.8 bits (40), Expect = 3e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 1 gtctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctca 60
||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 11 gtctcagaaggcagcgctctcagggcacctccaccatggcctgggctctgctcctcctca 70
>RF00952;mir-650;AANU01210643.1/9228-9138 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 73.8 bits (37), Expect = 2e-13
Identities = 53/58 (91%), Gaps = 4/58 (6%)
Strand = Plus / Plus
Query: 4 tcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctcac 61
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 14 tcaggaggcagcgctctcag----tctccaccatggcctgggctctgctcctcctcac 67
>RF00952;mir-650;AAWR02038310.1/87959-87865 9796:Equus caballus
(horse)
Length = 95
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 gtctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctca 60
||||||| | |||| ||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 11 gtctcagaaagcagtgctcttggggcgtctccaccatggcctgggctctgctcctcctca 70
Query: 61 cc 62
||
Sbjct: 71 cc 72
>RF00952;mir-650;AACZ02233323.1/2086-1994 9598:Pan troglodytes
(chimpanzee)
Length = 93
Score = 67.9 bits (34), Expect = 1e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 23 ggacgtctccaccatggtctgggctctgctcctcctca 60
||||||||||||||||| ||||||||||||||||||||
Sbjct: 32 ggacgtctccaccatggcctgggctctgctcctcctca 69
>RF00952;mir-650;AAPY01440642.1/1292-1385 37347:Tupaia belangeri
(northern tree shrew)
Length = 94
Score = 65.9 bits (33), Expect = 5e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 26 cgtctccaccatggtctgggctctgctcctcctcacc 62
|||||||||||||| ||||||||||||||||||||||
Sbjct: 35 cgtctccaccatggcctgggctctgctcctcctcacc 71
>RF00952;mir-650;AAFC03006146.1/17191-17099 9913:Bos taurus
(cattle)
Length = 93
Score = 61.9 bits (31), Expect = 8e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctcacc 62
||||||||||||||||||||||||||||| |||||
Sbjct: 36 tctccaccatggtctgggctctgctcctcatcacc 70
>RF00952;mir-650;AANU01210623.1/10437-10347 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 58.0 bits (29), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 1 gtctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctc 59
|||||||||||||| ||||||||||| | |||||| | |||||||||||||||||||
Sbjct: 10 gtctcaggaggcagagctctcaggacat---caccatagcctgggctctgctcctcctc 65
>RF00952;mir-650;AAGW01499587.1/2632-2723 9986:Oryctolagus
cuniculus (rabbit)
Length = 92
Score = 58.0 bits (29), Expect = 1e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 26 cgtctccaccatggtctgggctctgctcctcctcacc 62
||||| |||||||| ||||||||||||||||||||||
Sbjct: 33 cgtctgcaccatggcctgggctctgctcctcctcacc 69
>RF00952;mir-650;ABDC01347843.1/2261-2349 30608:Microcebus murinus
(gray mouse lemur)
Length = 89
Score = 54.0 bits (27), Expect = 2e-07
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 9 aggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctc 59
|||||||||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 14 aggcagcgctctgggg-cgtctccaccacggcctgggctctgctcctcctc 63
>RF00952;mir-650;ABRN01253218.1/12975-13067 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 93
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 26 cgtctccaccatggtctgggctctgctcct 55
|||||||||||||| |||||||||||||||
Sbjct: 34 cgtctccaccatggcctgggctctgctcct 63
>RF00952;mir-650;AAGV020034474.1/1514-1420 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 95
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tccaccatggtctgggctctgctcctcct 58
|||||||||| ||||||||||||||||||
Sbjct: 40 tccaccatggcctgggctctgctcctcct 68
>RF00952;mir-650;AAFC03006141.1/4400-4308 9913:Bos taurus (cattle)
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 26 cgtctccaccatggtctgggctctgctcctcctcacc 62
||||||||||||| |||||||||||||||| |||||
Sbjct: 34 cgtctccaccatgtcctgggctctgctcctcatcacc 70
>RF00952;mir-650;AANU01210692.1/6129-6039 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 26 cgtctccaccatggtctgggctctgctcctcctcacc 62
|||||||||||||| |||||||| ||||||||||||
Sbjct: 32 cgtctccaccatggcctgggctccactcctcctcacc 68
>RF00952;mir-650;ABRT010825472.1/1666-1572 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 27 gtctccaccatggtctgggctctgctcctcctcacc 62
|||||||||| || |||| |||||||||||||||||
Sbjct: 37 gtctccaccacggcctggcctctgctcctcctcacc 72
>RF00952;mir-650;AAWR02038310.1/141035-140941 9796:Equus caballus
(horse)
Length = 95
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctcacc 62
||||||| |||| |||||||||||||||| |||||
Sbjct: 38 tctccactatggcctgggctctgctcctcatcacc 72
>RF00952;mir-650;AAWR02038310.1/54887-54794 9796:Equus caballus
(horse)
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctcacc 62
|||||||||||| | | ||||||||||||||||||
Sbjct: 37 tctccaccatggccagtgctctgctcctcctcacc 71
>RF00952;mir-650;AAWR02038310.1/76191-76097 9796:Equus caballus
(horse)
Length = 95
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctcacc 62
|||||||||||| || || ||||||||||||||||
Sbjct: 38 tctccaccatggccttggttctgctcctcctcacc 72
>RF00952;mir-650;AANN01778356.1/4698-4791 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctcacc 62
|||||||||||| ||||| ||||||| ||||||||
Sbjct: 37 tctccaccatggcctgggttctgctcttcctcacc 71
>RF00952;mir-650;AANN01442391.1/982-1071 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctcacc 62
|||||||||||| |||||| |||||| ||||||||
Sbjct: 33 tctccaccatggcctgggccctgctcttcctcacc 67
>RF00952;mir-650;AACN010127126.1/1088-994 9615:Canis lupus
familiaris (dog)
Length = 95
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctcacc 62
|||||||||||| |||| ||||| |||||||||||
Sbjct: 38 tctccaccatggcctggactctggtcctcctcacc 72
>RF00952;mir-650;AAPY01472742.1/638-730 37347:Tupaia belangeri
(northern tree shrew)
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 27 gtctccaccatggtctgggctctgctcctcctcac 61
||||||||||||| |||| ||||| ||||||||||
Sbjct: 35 gtctccaccatggcctggactctgttcctcctcac 69
>RF00952;mir-650;ABRT010402342.1/832-923 9478:Tarsius syrichta
(Philippine tarsier)
Length = 92
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcc 54
|||||||||||| ||||||||||||||
Sbjct: 35 tctccaccatggcctgggctctgctcc 61
>RF00952;mir-650;AACN010976540.1/395-303 9615:Canis lupus
familiaris (dog)
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 ccaccatggtctgggctctgctcctcctca 60
||||||||| ||||||||||||| ||||||
Sbjct: 41 ccaccatggcctgggctctgctcatcctca 70
>RF00952;mir-650;AAQR01429354.1/638-549 30611:Otolemur garnettii
(small-eared galago)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 29 ctccaccatggtctgggctctgctcctcctcacc 62
||||||||||| || ||||||| |||||||||||
Sbjct: 34 ctccaccatggcctaggctctggtcctcctcacc 67
>RF00952;mir-650;ABVD01470222.1/504-413 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 92
Score = 42.1 bits (21), Expect = 7e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 29 ctccaccatggtctgggctctgctcctcctcac 61
||||||||||| |||||||| |||||||||||
Sbjct: 36 ctccaccatggcctgggctcccctcctcctcac 68
>RF00952;mir-650;AAGV020497125.1/386-298 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 89
Score = 42.1 bits (21), Expect = 7e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctcctca 60
|||||||||||||||||||| ||||||||||
Sbjct: 32 tctccaccatggtctgggcttccctcctcctca 64
>RF00952;mir-650;AAWR02038312.1/223659-223569 9796:Equus caballus
(horse)
Length = 91
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctc 48
|||||||||||||||||||||
Sbjct: 36 tctccaccatggtctgggctc 56
>RF00952;mir-650;AAWR02042338.1/76049-75957 9796:Equus caballus
(horse)
Length = 93
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 28 tctccaccatggtctgggctctgctcctc 56
|||||||||||| |||||||| |||||||
Sbjct: 37 tctccaccatggcctgggctccgctcctc 65
>RF00952;mir-650;AANN01840108.1/4686-4777 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 42.1 bits (21), Expect = 7e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 22 aggacgtctccaccatggtctgggctctgctcctcctcacc 62
||||| || ||||||||| ||||||||||||| | ||||||
Sbjct: 29 aggacatcaccaccatggcctgggctctgctctttctcacc 69
>RF00952;mir-650;ABRP01240163.1/9497-9585 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 42.1 bits (21), Expect = 7e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 26 cgtctccaccatggtctgggctctgctcctcctcacc 62
|||||| ||||||| |||||||| ||||||||||||
Sbjct: 30 cgtctctaccatggcctgggctcctctcctcctcacc 66
