miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1
OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1
Length = 953
Score = 58.9 bits (141), Expect = 1e-08
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = -1
Query: 167 LIGLNSELKMPKMQFLSNAKPSTYGYPAPL-XXXXXXXXXXXXXVLSITAKAKKKD 3
+IGLN +LKMPK+Q+ SN KPST+ YPAPL VLSITAKAKKK+
Sbjct: 788 IIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAKKKE 843
>sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit
1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1
Length = 953
Score = 58.5 bits (140), Expect = 1e-08
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = -1
Query: 167 LIGLNSELKMPKMQFLSNAKPSTYGYPAPL-XXXXXXXXXXXXXVLSITAKAKKKD 3
+IGLN +LKMPK+Q+ SN KPST+ YPAPL VLSITAKAKKK+
Sbjct: 788 VIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAKKKE 843
>sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit
1 OS=Mus musculus GN=Psmd1 PE=1 SV=1
Length = 953
Score = 58.5 bits (140), Expect = 1e-08
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = -1
Query: 167 LIGLNSELKMPKMQFLSNAKPSTYGYPAPL-XXXXXXXXXXXXXVLSITAKAKKKD 3
+IGLN +LKMPK+Q+ SN KPST+ YPAPL VLSITAKAKKK+
Sbjct: 788 VIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAKKKE 843
>sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit
1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2
Length = 953
Score = 58.5 bits (140), Expect = 1e-08
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = -1
Query: 167 LIGLNSELKMPKMQFLSNAKPSTYGYPAPL-XXXXXXXXXXXXXVLSITAKAKKKD 3
+IGLN +LKMPK+Q+ SN KPST+ YPAPL VLSITAKAKKK+
Sbjct: 788 VIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAKKKE 843
>sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit
1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1
Length = 955
Score = 56.6 bits (135), Expect = 5e-08
Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = -1
Query: 167 LIGLNSELKMPKMQFLSNAKPSTYGYPAPL-XXXXXXXXXXXXXVLSITAKAKKKD 3
+IGLN +LKMPK+Q+ SN KPST+ YP PL VLSITAKAKKK+
Sbjct: 788 VIGLNKDLKMPKVQYKSNCKPSTFAYPPPLEVPKEKEKEKVSTAVLSITAKAKKKE 843
>sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit
1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1
Length = 1020
Score = 50.8 bits (120), Expect = 3e-06
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -1
Query: 167 LIGLNSELKMPKMQFLSNAKPSTYGYPAPL-XXXXXXXXXXXXXVLSITAKAKKKD 3
+IGLNS+LKMPKM++ S AKPS Y YPAPL VLSI A+ K+++
Sbjct: 804 VIGLNSDLKMPKMEYKSAAKPSLYAYPAPLEEKKSEEREKVATAVLSIAARQKRRE 859
