miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00655;mir-28;AAPN01256335.1/8953-9035 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 53 atccctgccctcaaggagcttacaattta 81
|||||||||| ||||||||||||||||||
Sbjct: 82 atccctgcccccaaggagcttacaattta 54
>RF00917;mir-708;AAPN01256335.1/8956-9033 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 54 tccctgccctcaaggagcttacaattta 81
||||||||| ||||||||||||||||||
Sbjct: 78 tccctgcccccaaggagcttacaattta 51
>RF00917;mir-708;AAPN01061930.1/1824-1920 9258:Ornithorhynchus
anatinus (platypus)
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 tccctgccctcaaggagcttaca 76
|||||||||||||||||||||||
Sbjct: 97 tccctgccctcaaggagcttaca 75
>RF00917;mir-708;AAPN01136206.1/6818-6887 9258:Ornithorhynchus
anatinus (platypus)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 cctgccctcaaggagcttacaat 78
|||||||||||||||||||||||
Sbjct: 2 cctgccctcaaggagcttacaat 24
>RF00655;mir-28;AAPN01140681.1/7282-7379 9258:Ornithorhynchus
anatinus (platypus)
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 atccctgccctcaaggagcttac 75
|||||||||||||||||||||||
Sbjct: 2 atccctgccctcaaggagcttac 24
>RF00655;mir-28;AAPN01136206.1/6889-6815 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 56 cctgccctcaaggagcttacaat 78
|||||||||||||||||||||||
Sbjct: 71 cctgccctcaaggagcttacaat 49
>RF00655;mir-28;AAPN01300156.1/3194-3091 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 atccctgccctcaaggagcttac 75
|||||||||||||||||||||||
Sbjct: 2 atccctgccctcaaggagcttac 24
>RF00655;mir-28;AAPN01061930.1/1821-1922 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 tccctgccctcaaggagcttaca 76
|||||||||||||||||||||||
Sbjct: 100 tccctgccctcaaggagcttaca 78
>RF00917;mir-708;AAPN01300156.1/3094-3192 9258:Ornithorhynchus
anatinus (platypus)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 54 tccctgccctcaaggagcttac 75
||||||||||||||||||||||
Sbjct: 99 tccctgccctcaaggagcttac 78
>RF00917;mir-708;ABRP01067784.1/10295-10387 132908:Pteropus
vampyrus (large flying fox)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctgccctcaaggagcttacaat 78
||||||||||||||||||||||
Sbjct: 3 ctgccctcaaggagcttacaat 24
>RF00917;mir-708;AAYZ01001621.1/4751-4664 9978:Ochotona princeps
(American pika)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctgccctcaaggagcttacaat 78
||||||||||||||||||||||
Sbjct: 3 ctgccctcaaggagcttacaat 24
>RF00917;mir-708;ABRQ01033298.1/1355-1442 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctgccctcaaggagcttacaat 78
||||||||||||||||||||||
Sbjct: 3 ctgccctcaaggagcttacaat 24
>RF00655;mir-28;AAPN01363927.1/2867-2954 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 53 atccctgccctcaaggagcttacaat 78
|||||||||| |||||||||||||||
Sbjct: 87 atccctgcccacaaggagcttacaat 62
>RF00655;mir-28;AAPN01179784.1/65392-65315 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 53 atccctgccctcaaggagcttacaat 78
||||||||||||||| ||||||||||
Sbjct: 77 atccctgccctcaagaagcttacaat 52
>RF00655;mir-28;AAPN01326867.1/2619-2541 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 53 atccctgccctcaaggagcttacaat 78
|||||| |||||||||||||||||||
Sbjct: 78 atccctaccctcaaggagcttacaat 53
>RF00655;mir-28;AAPN01126717.1/53753-53866 9258:Ornithorhynchus
anatinus (platypus)
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 53 atccctgccctcaaggagctta 74
||||||||||||||||||||||
Sbjct: 113 atccctgccctcaaggagctta 92
>RF00655;mir-28;AAGV020456123.1/438-346 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 ctgccctcaaggagcttacaat 78
||||||||||||||||||||||
Sbjct: 88 ctgccctcaaggagcttacaat 67
>RF00655;mir-28;AAEX02028916.1/2970-3062 9615:Canis lupus
familiaris (dog)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 ctgccctcaaggagcttacaat 78
||||||||||||||||||||||
Sbjct: 88 ctgccctcaaggagcttacaat 67
>RF00655;mir-28;AAYZ01598458.1/215-123 9978:Ochotona princeps
(American pika)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 ctgccctcaaggagcttacaat 78
||||||||||||||||||||||
Sbjct: 88 ctgccctcaaggagcttacaat 67
>RF00655;mir-28;ABRQ01033298.1/1444-1352 9813:Procavia capensis
(cape rock hyrax)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 ctgccctcaaggagcttacaat 78
||||||||||||||||||||||
Sbjct: 88 ctgccctcaaggagcttacaat 67
