miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 79.8 bits (40), Expect = 1e-14
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 21 tggagctccttgaagtc-aatagagtttcttgctgggtatattgagctgcttggctatgg 79
||||||||||||||||| ||||||| ||||||||||||| ||| ||||||| |||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70
Query: 80 atcccacagtcctatc 95
|| |||||||||||||
Sbjct: 71 at-ccacagtcctatc 85
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 16 aggaatggagctccttgaagtc-aatagagtttcttgctgggtatattgagctgcttggc 74
|||| ||||||||||||||||| ||||||| ||||| |||||| ||||||||||| ||
Sbjct: 6 aggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagc 65
Query: 75 tatggatcccacagtcctat 94
|||||||||||||| |||||
Sbjct: 66 tatggatcccacagccctat 85
Score = 69.9 bits (35), Expect = 1e-11
Identities = 75/86 (87%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 108 ggataggcttgcgggctccatatctcaggagcttcattacctttaaaagtagaatccttg 167
||||||||||| || | ||||||||||||||||||||||||| | |||| ||||||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagcttcattaccttgtat--taga-tccttg 161
Query: 168 tttggattggagggagctctacatct 193
||||||||| ||||||||||||||||
Sbjct: 162 tttggattgaagggagctctacatct 187
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 67.9 bits (34), Expect = 5e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 21 tggagctccttgaagtc-aatagagtttcttgctgggtatattgagctgcttggctatgg 79
||||||||||||||||| ||||||| |||| ||||||| ||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 80 atcccacagtcctatccc 97
||||||||| ||||||||
Sbjct: 71 atcccacagccctatccc 88
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 60.0 bits (30), Expect = 1e-08
Identities = 68/80 (85%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 111 taggcttgcgggctccatatctcaggagcttcattacctttaaaagtagaatccttgttt 170
||||||||||| | ||||||||||||||| ||||||| | ||| |||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccct---aagcttaatccttgttt 164
Query: 171 ggattggagggagctctaca 190
|||||| |||||||||||||
Sbjct: 165 ggattgaagggagctctaca 184
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 23 gagctccttgaagt-caatagagtttcttgctgggtatattgagctgcttggctatggat 81
|||||||||||||| ||||||| || ||||||||| || |||||||| |||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 82 cccacagtcctatc 95
||||||| ||||||
Sbjct: 61 cccacagccctatc 74
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 168 tttggattggagggagctctacatcttct 196
||||||||| |||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacatcttct 200
