miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 127 bits (64), Expect = 3e-29
Identities = 88/95 (92%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 9 aaagcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaa 68
|||||||||||||||||||||||||||||||||||||||| || || ||| ||||||
Sbjct: 6 aaagcgatgttggtgaggttcaatccgaagacggatttac--atgtatagagttgtaaaa 63
Query: 69 tacgatctcagattgagccgcgccaatatcacttt 103
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tacgatctcagattgagccgcgccaatatcacttt 98
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 109 bits (55), Expect = 8e-24
Identities = 86/96 (89%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 8 gaaagcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaa 67
||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct: 5 gaaagcgatgttggtgaggttcaatccgaagacggatttac----acattctgttgtaaa 60
Query: 68 atacgatctcagattgagccgcgccaatatcacttt 103
||||||||||||||||||||||||||||||||||
Sbjct: 61 ggacgatctcagattgagccgcgccaatatcacttt 96
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 105 bits (53), Expect = 1e-22
Identities = 88/100 (88%), Gaps = 6/100 (6%)
Strand = Plus / Plus
Query: 5 aaagaaagcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgt 64
|||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 2 aaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaa------gagccgt 55
Query: 65 aaaatacgatctcagattgagccgcgccaatatcactttc 104
||| |||||||| ||||||||||||||||||||||||||
Sbjct: 56 aaagaacgatctctgattgagccgcgccaatatcactttc 95
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/93 (88%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 10 aagcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaat 69
|||||||||||||||||||||||||||||||| ||||| | | ||| |||||||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacgaatttatg--cttatt--ttcgtaaaga 62
Query: 70 acgatctcagattgagccgcgccaatatcactt 102
|||||||||||||||||||||||||||||||||
Sbjct: 63 acgatctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 87/101 (86%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 5 aaagaaagcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgt 64
||||||||||||||||||||||||||||| |||||| ||||||| | ||| | | ||
Sbjct: 2 aaagaaagcgatgttggtgaggttcaatctgaagacagatttac-atgagatgcgattgt 60
Query: 65 aaaatacgatctcagattgagccgcgccaatatcactttcc 105
||| |||||||||| ||||||||||||||||||||||||
Sbjct: 61 --aattcgatctcagaatgagccgcgccaatatcactttcc 99
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 75.8 bits (38), Expect = 1e-13
Identities = 80/92 (86%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 11 agcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaata 70
|||||||||||||||||||||||||||||| ||||||| || | | |||||||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttacac---gagtgaaa-gtaaaatc 56
Query: 71 cgatctcagattgagccgcgccaatatcactt 102
||||||||||||||||||||||||||||||||
Sbjct: 57 cgatctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 67.9 bits (34), Expect = 3e-11
Identities = 83/98 (84%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 6 aagaaagcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgta 65
|||||||||||||||||||||||||||| ||||| |||||| | |||| | |||
Sbjct: 3 aagaaagcgatgttggtgaggttcaatctgaagattgatttatgc-ttgaat-----gta 56
Query: 66 aaatacgatctcagattgagccgcgccaatatcacttt 103
||| ||||||||||||||||||||||||||||||||
Sbjct: 57 aaaactgatctcagattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;ABEU01001861.1/185639-185542 145481:Physcomitrella
patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 ctcagattgagccgcgccaatatcac 100
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tcagattgagccgcgccaatatcac 100
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatcactt 102
||||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcactt 111
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatcac 100
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatcac 100
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 agcgatgttggtgaggttcaatccga 36
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
