miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48493_ghr-miR162a:pmrd
Length = 148
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggtaaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ggtaaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaat 73
Query: 61 aacacaaatacatgaatcgatcgataaacctctgcatccagcgccttaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 aacacaaatacatgaatcgatcgataaacctctgcatccagcgccttaac 123
>48423_cpa-miR162a:pmrd
Length = 109
Score = 109 bits (55), Expect = 4e-25
Identities = 94/103 (91%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 1 ggtaaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaat 60
||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| ||
Sbjct: 3 ggtaaagtcactggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aaa 60
Query: 61 aacacaaatacatgaatcgatcgataaacctctgcatccagcg 103
| |||| | ||||||||||||||||||||||||||||||||||
Sbjct: 61 atcacaga-acatgaatcgatcgataaacctctgcatccagcg 102
>54387_rco-miR162:pmrd
Length = 96
Score = 87.7 bits (44), Expect = 2e-18
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcct-gagaattttgttgtgaga-ataacaca 66
|||||||||||||||||||||||||||||||| || |||||||||||| | | || |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 67 aatacatgaatcgatcgataaacctctgcatccagc 102
|| ||||||||||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 4e-16
Identities = 87/101 (86%), Gaps = 5/101 (4%)
Strand = Plus / Minus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataaca 64
||||||||||||||||||||||||||||||||||||| | ||| |||| || ||
Sbjct: 101 aagacactggaggcagcggttcatcgatctcttcctggccaattttttgt----ttagca 46
Query: 65 c-aaatacatgaatcgatcgataaacctctgcatccagcgc 104
| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 45 cgaaaaacatgaaccgatcgataaacctctgcatccagcgc 5
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 4e-16
Identities = 87/101 (86%), Gaps = 5/101 (4%)
Strand = Plus / Minus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataaca 64
||||||||||||||||||||||||||||||||||||| | ||| |||| || ||
Sbjct: 101 aagacactggaggcagcggttcatcgatctcttcctggccaattttttgt----ttagca 46
Query: 65 c-aaatacatgaatcgatcgataaacctctgcatccagcgc 104
| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 45 cgaaaaacatgaaccgatcgataaacctctgcatccagcgc 5
>51616_ptc-miR162a:pmrd
Length = 107
Score = 79.8 bits (40), Expect = 4e-16
Identities = 87/101 (86%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataaca 64
||||||||||||||||||||||||||||||||||||| | ||| |||| || ||
Sbjct: 5 aagacactggaggcagcggttcatcgatctcttcctggccaattttttgt----ttagca 60
Query: 65 c-aaatacatgaatcgatcgataaacctctgcatccagcgc 104
| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 61 cgaaaaacatgaaccgatcgataaacctctgcatccagcgc 101
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||||||||| |||||||
Sbjct: 100 aagacactggaggcagcggttcatcgatcttttcctga 63
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||||||||| |||||||
Sbjct: 102 aagacactggaggcagcggttcatcgatcttttcctga 65
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||||||||| |||||||
Sbjct: 102 aagacactggaggcagcggttcatcgatcttttcctga 65
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||||||||| |||||||
Sbjct: 100 aagacactggaggcagcggttcatcgatcttttcctga 63
>51618_ptc-miR162c:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||||||||| |||||||
Sbjct: 5 aagacactggaggcagcggttcatcgatcttttcctga 42
>51617_ptc-miR162b:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||||||||| |||||||
Sbjct: 5 aagacactggaggcagcggttcatcgatcttttcctga 42
>48545_gma-miR162a:pmrd
Length = 102
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 71 catgaatcgatcgataaacctctgcatccagcgc 104
||||||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccagcgc 96
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctga 42
||||||| ||||||||||||||||||||||||||
Sbjct: 8 cactggatgcagcggttcatcgatctcttcctga 41
>54784_vvi-miR162:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 80/95 (84%), Gaps = 6/95 (6%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaa 68
||||||| |||||||||||||||||||||||||| | ||||||||| || | || |
Sbjct: 7 cactggatgcagcggttcatcgatctcttcctgaaa---ttgttgtgaaaaaagcaga-- 61
Query: 69 tacatgaatcgatcgataaacctctgcatccagcg 103
|| |||||| |||||||||||||||||||||||
Sbjct: 62 -tcaagaatcggtcgataaacctctgcatccagcg 95
>48690_mdo-miR162:pmrd
Length = 88
Score = 61.9 bits (31), Expect = 9e-11
Identities = 79/91 (86%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaata 70
||||||||| |||||||||||||| || ||||| |||||||||||| | |||||| |
Sbjct: 1 ctggaggcatcggttcatcgatctgtttatgaga-ttttgttgtgagta-aacacagtt- 57
Query: 71 catgaatcgatcgataaacctctgcatccag 101
||||||||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
>48682_llu-miR162:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 71 catgaatcgatcgataaacctctgcatccag 101
|||||||||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 74 gaatcgatcgataaacctctgcatccagcgc 104
|||||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccagcgc 12
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 11 ctggaggcagcggttcatcgatctcttcctgagaat 46
||||||||||||||||||||||| |||||| ||||
Sbjct: 102 ctggaggcagcggttcatcgatcaattcctgtgaat 67
>46938_ath-miR162b:pmrd
Length = 111
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccagcgc 104
|||||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcgc 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctgagaat 46
||||||||||||||||||||||| |||||| ||||
Sbjct: 12 ctggaggcagcggttcatcgatcaattcctgtgaat 47
>46937_ath-miR162a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 71 catgaatcgatcgataaacctctgcatccagcg 103
||||||| |||||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcg 111
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 70 acatgaatcgatcgataaacctctgcatccag 101
|||||||||| |||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 70 acatgaatcgatcgataaacctctgcatcca 100
|||||||||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 11 ctggaggcagcggttcatcgatctcttcctga 42
||||| |||||||||||||||||| |||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctga 55
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 70 acatgaatcgatcgataaacctctgcatcca 100
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tggaggcagcggttcatcgatctcttcctga 42
|||| |||||||||||||||||| |||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctga 31
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48685_lsa-miR162:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tcgataaacctctgcatccagcgc 104
||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgc 24
>48546_gma-miR162m:pmrd
Length = 367
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tcgataaacctctgcatccagcgc 104
||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgc 24
