miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 99.6 bits (50), Expect = 7e-21
Identities = 86/94 (91%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaa 68
||||||||||||||||||||||||||||||||| ||| |||| ||||| || | |||| |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aaaatcacaga 58
Query: 69 tacatgaatcgatcgataaacctctgcatccagc 102
|||||||||||||||||||||||||||||||||
Sbjct: 59 -acatgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 87.7 bits (44), Expect = 3e-17
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcct-gagaattttgttgtgaga-ataacaca 66
|||||||||||||||||||||||||||||||| || |||||||||||| | | || |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 67 aatacatgaatcgatcgataaacctctgcatccagc 102
|| ||||||||||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 67.9 bits (34), Expect = 3e-11
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacac-aa 67
||||||||||||||||||||||||||||||||| | ||| |||| || ||| ||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggccaattttttgt----ttagcacgaa 56
Query: 68 atacatgaatcgatcgataaacctctgcatccagc 102
| ||||||| |||||||||||||||||||||||||
Sbjct: 57 aaacatgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 71 catgaatcgatcgataaacctctgcatccagc 102
||||||| ||||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||||| |||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctga 34
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctga 42
||||||| ||||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctga 34
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccagc 102
|||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctgagaat 46
||||||||||||||||||||||| |||||| ||||
Sbjct: 3 ctggaggcagcggttcatcgatcaattcctgtgaat 38
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 70 acatgaatcgatcgataaacctctgcatccagc 102
|||||||||| ||||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccagc 102
|||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccagc 102
|||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 gaatcgatcgataaacctctgcatccag 101
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctctt 37
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
