miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;ABGA01319971.1/6088-5802 9601:Pongo abelii
(Sumatran orangutan)
Length = 287
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 ggccaggcacagtggctcacgcctgtaat 76
|||||||||||||||||||||||||||||
Sbjct: 170 ggccaggcacagtggctcacgcctgtaat 198
>RF00017;Metazoa_SRP;ABGA01037467.1/10550-10834 9601:Pongo abelii
(Sumatran orangutan)
Length = 285
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||||||
Sbjct: 1 gccaggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;ABGA01049563.1/12651-12362 9601:Pongo abelii
(Sumatran orangutan)
Length = 290
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||||||
Sbjct: 1 gccaggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AC189688.3/127858-127576 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||||||
Sbjct: 1 gccaggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AANU01208877.1/1615-1335 9544:Macaca mulatta
(rhesus monkey)
Length = 281
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||||||
Sbjct: 1 gccaggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;ABBA01005882.1/5078-5354 9606:Homo sapiens
(human)
Length = 277
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 46 caggccaggcacagtggctcacgcctgtaat 76
||||||||||||||||||||| |||||||||
Sbjct: 157 caggccaggcacagtggctcaagcctgtaat 187
>RF00017;Metazoa_SRP;CABD01196201.1/2840-3149 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 310
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 46 caggccaggcacagtggctcacgcctgtaat 76
|||||||||| ||||||||||||||||||||
Sbjct: 181 caggccaggcgcagtggctcacgcctgtaat 211
>RF00017;Metazoa_SRP;AANU01210593.1/5048-5324 9544:Macaca mulatta
(rhesus monkey)
Length = 277
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 46 caggccaggcacagtggctcacgcctgtaat 76
|||||||||||||||||||||| ||||||||
Sbjct: 185 caggccaggcacagtggctcacacctgtaat 215
>RF00017;Metazoa_SRP;ABGA01235022.1/8857-9144 9601:Pongo abelii
(Sumatran orangutan)
Length = 288
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||||||| ||||||||||||||||||||
Sbjct: 170 aggccaggcgcagtggctcacgcctgtaat 199
>RF00017;Metazoa_SRP;AADB02288330.1/334-619 9606:Homo sapiens
(human)
Length = 286
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||||||| ||||||||||||||||||||
Sbjct: 168 aggccaggctcagtggctcacgcctgtaat 197
>RF00017;Metazoa_SRP;ABSL01223068.1/830-1139 9606:Homo sapiens
(human)
Length = 310
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||||||| ||||||||||||||||||||
Sbjct: 182 aggccaggcgcagtggctcacgcctgtaat 211
>RF00017;Metazoa_SRP;AANU01098728.1/42020-42278 9544:Macaca mulatta
(rhesus monkey)
Length = 259
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 ggccaggcacagtggctcacgcctgtaat 76
|||||||||| ||||||||||||||||||
Sbjct: 142 ggccaggcacggtggctcacgcctgtaat 170
>RF00017;Metazoa_SRP;AANU01105306.1/20233-20500 9544:Macaca mulatta
(rhesus monkey)
Length = 268
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 ggccaggcacagtggctcacgcctgtaat 76
|||||||||||||||||||| ||||||||
Sbjct: 231 ggccaggcacagtggctcacacctgtaat 259
>RF00017;Metazoa_SRP;ABDC01398661.1/4360-4648 30608:Microcebus
murinus (gray mouse lemur)
Length = 289
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 180 ggcacagtggctcacgcctgtaat 203
>RF00017;Metazoa_SRP;ABRT010507985.1/398-677 9478:Tarsius syrichta
(Philippine tarsier)
Length = 280
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;EU086471.1/8032-8272 9590:Symphalangus
syndactylus (siamang)
Length = 241
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 209 ggcacagtggctcacgcctgtaat 232
>RF00017;Metazoa_SRP;ABGA01172272.1/9412-9694 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AADA01187409.1/9085-8803 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AACZ02154509.1/5623-5904 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
||||||| ||||||||||||||||||||
Sbjct: 1 gccaggcgcagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AADB02032022.1/472-179 9606:Homo sapiens
(human)
Length = 294
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;ABSL01056788.1/2749-2468 9606:Homo sapiens
(human)
Length = 282
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
|||||||||||||||||| |||||||||
Sbjct: 166 gccaggcacagtggctcatgcctgtaat 193
>RF00017;Metazoa_SRP;AADC01118446.1/254522-254241 9606:Homo
sapiens (human)
Length = 282
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AADC01138791.1/467660-467394 9606:Homo sapiens
(human)
Length = 267
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
|||||||||||||||||| |||||||||
Sbjct: 229 gccaggcacagtggctcatgcctgtaat 256
>RF00017;Metazoa_SRP;AADC01009840.1/7346-7628 9606:Homo sapiens
(human)
Length = 283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AADD01142743.1/2651-2932 9606:Homo sapiens
(human)
Length = 282
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
||||||| ||||||||||||||||||||
Sbjct: 1 gccaggcgcagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;CABD01015594.2/4085-4358 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 274
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AANU01232491.1/12086-12368 9544:Macaca
mulatta (rhesus monkey)
Length = 283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgtaat 76
||||||| ||||||||||||||||||||
Sbjct: 1 gccaggcgcagtggctcacgcctgtaat 28
>RF00100;7SK;ABGA01081985.1/70-384 9601:Pongo abelii (Sumatran
orangutan)
Length = 315
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggcacagtggctcacgcctgtaat 76
||||||||||||||||||||||||
Sbjct: 252 ggcacagtggctcacgcctgtaat 275
>RF00017;Metazoa_SRP;ABDC01347903.1/26-322 30608:Microcebus murinus
(gray mouse lemur)
Length = 297
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 46 caggccaggcacagtggctcacgcctgtaat 76
|||||||||| |||||||||||||||||||
Sbjct: 178 caggccaggcgtagtggctcacgcctgtaat 208
>RF00017;Metazoa_SRP;ABGA01013480.1/3405-3125 9601:Pongo abelii
(Sumatran orangutan)
Length = 281
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||| ||| ||||||||||||||||||||
Sbjct: 163 aggccgggcgcagtggctcacgcctgtaat 192
>RF00017;Metazoa_SRP;ABGA01063191.1/3282-3023 9601:Pongo abelii
(Sumatran orangutan)
Length = 260
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cacagtggctcacgcctgtaat 76
||||||||||||||||||||||
Sbjct: 150 cacagtggctcacgcctgtaat 171
>RF00017;Metazoa_SRP;AACZ02008236.1/6095-6390 9598:Pan troglodytes
(chimpanzee)
Length = 296
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
|||||||||| ||||||||||||||||||
Sbjct: 178 aggccaggcatggtggctcacgcctgtaat 207
>RF00017;Metazoa_SRP;AADA01241454.1/33373-33099 9598:Pan troglodytes
(chimpanzee)
Length = 275
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 caggcacagtggctcacgcctgtaat 76
||||| ||||||||||||||||||||
Sbjct: 162 caggcgcagtggctcacgcctgtaat 187
>RF00017;Metazoa_SRP;AADC01142231.1/42061-41772 9606:Homo sapiens
(human)
Length = 290
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||| ||| ||||||||||||||||||||
Sbjct: 172 aggccgggcgcagtggctcacgcctgtaat 201
>RF00017;Metazoa_SRP;ABBA01039737.1/49277-49003 9606:Homo sapiens
(human)
Length = 275
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 caggcacagtggctcacgcctgtaat 76
||||| ||||||||||||||||||||
Sbjct: 162 caggcgcagtggctcacgcctgtaat 187
>RF00017;Metazoa_SRP;CABD01090821.1/4974-4685 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 290
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgta 74
||||||||||||||||||| ||||||
Sbjct: 1 gccaggcacagtggctcacacctgta 26
>RF00017;Metazoa_SRP;AANU01185101.1/26306-26605 9544:Macaca
mulatta (rhesus monkey)
Length = 300
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 gccaggcacagtggctcacgcctgta 74
||||||||||||||| ||||||||||
Sbjct: 1 gccaggcacagtggcacacgcctgta 26
>RF00017;Metazoa_SRP;AANU01285982.1/9962-9671 9544:Macaca mulatta
(rhesus monkey)
Length = 292
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||| |||||||||||||| |||||||||
Sbjct: 174 aggccgggcacagtggctcatgcctgtaat 203
>RF01241;SNORA81;AANU01221592.1/565-734 9544:Macaca mulatta (rhesus
monkey)
Length = 170
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||||||| ||||||||||| ||||||||
Sbjct: 126 aggccaggcgcagtggctcacacctgtaat 155
>RF00100;7SK;AANU01195481.1/38752-39111 9544:Macaca mulatta (rhesus
monkey)
Length = 360
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||||||| | ||||||||||||||||||
Sbjct: 320 aggccaggcgcggtggctcacgcctgtaat 349
>RF00001;5S_rRNA;ABDC01177585.1/1734-1814 30608:Microcebus murinus
(gray mouse lemur)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 aggccaggcacagtggctcacgcctgtaat 76
||||||||||| ||||||||| ||||||||
Sbjct: 50 aggccaggcacggtggctcacacctgtaat 79
>RF00017;Metazoa_SRP;ABDC01226817.1/2495-2782 30608:Microcebus
murinus (gray mouse lemur)
Length = 288
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 ggccaggcacagtggctcacgcctgtaat 76
|||| ||| ||||||||||||||||||||
Sbjct: 223 ggccgggcgcagtggctcacgcctgtaat 251
>RF00017;Metazoa_SRP;AC188057.1/176104-176405 9483:Callithrix
jacchus (white-tufted-ear marmoset)
Length = 302
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 acagtggctcacgcctgtaat 76
|||||||||||||||||||||
Sbjct: 8 acagtggctcacgcctgtaat 28
>RF00017;Metazoa_SRP;AADA01299555.1/1495-1237 9598:Pan troglodytes
(chimpanzee)
Length = 259
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 ggccaggcacagtggctcacgcctgtaat 76
|||||||| |||||||| |||||||||||
Sbjct: 195 ggccaggcgcagtggcttacgcctgtaat 223
>RF00017;Metazoa_SRP;AADB02018692.1/148895-149154 9606:Homo sapiens
(human)
Length = 260
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 ggccaggcacagtggctcacgcctgtaat 76
|||||||| |||||||| |||||||||||
Sbjct: 195 ggccaggcgcagtggcttacgcctgtaat 223
>RF00019;Y_RNA;CABD01623543.2/2392-2498 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 107
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 48 ggccaggcacagtggctcacg 68
|||||||||||||||||||||
Sbjct: 49 ggccaggcacagtggctcacg 29
