miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00952;mir-650;AK129585.1/1-79 9606:Homo sapiens (human)
Length = 79
Score = 73.8 bits (37), Expect = 2e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 1 aggaggcagcgctctcaggacatctacaccatggcctgggctctgctgctcct 53
|||||||||||||||| |||| ||| | |||||||||||||||||||||||||
Sbjct: 10 aggaggcagcgctctcgggacgtctccgccatggcctgggctctgctgctcct 62
>RF00952;mir-650;AAPE01597063.1/4995-4901 59463:Myotis lucifugus
(little brown bat)
Length = 95
Score = 67.9 bits (34), Expect = 1e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 4 aggcagcgctctcaggacatctacaccatggcctgggctctgctgctcct 53
|||||||||||||||| || || ||||||||||||||||||||| |||||
Sbjct: 19 aggcagcgctctcagggcacctccaccatggcctgggctctgctcctcct 68
>RF00952;mir-650;AANU01210643.1/9228-9138 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 56.0 bits (28), Expect = 4e-08
Identities = 47/53 (88%), Gaps = 4/53 (7%)
Strand = Plus / Plus
Query: 1 aggaggcagcgctctcaggacatctacaccatggcctgggctctgctgctcct 53
|||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct: 16 aggaggcagcgctctcag----tctccaccatggcctgggctctgctcctcct 64
>RF00952;mir-650;AANU01210623.1/10437-10347 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 54.0 bits (27), Expect = 2e-07
Identities = 47/53 (88%), Gaps = 3/53 (5%)
Strand = Plus / Plus
Query: 1 aggaggcagcgctctcaggacatctacaccatggcctgggctctgctgctcct 53
||||||||| ||||||||||||| |||||| |||||||||||||| |||||
Sbjct: 15 aggaggcagagctctcaggacat---caccatagcctgggctctgctcctcct 64
>RF00952;mir-650;AANU01210640.1/17305-17211 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 50.1 bits (25), Expect = 2e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 aggaggcagcgctctcaggacatctacaccatggcctgggctctgctgctcct 53
||||| ||| ||| || |||| ||| ||||||||||||||||||||| |||||
Sbjct: 16 aggagacagtgctgtcgggacgtctccaccatggcctgggctctgctcctcct 68
>RF00952;mir-650;AACZ02233323.1/2086-1994 9598:Pan troglodytes
(chimpanzee)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 18 ggacatctacaccatggcctgggctctgctgctcct 53
|||| ||| ||||||||||||||||||||| |||||
Sbjct: 32 ggacgtctccaccatggcctgggctctgctcctcct 67
>RF00952;mir-650;AAGV020034474.1/1514-1420 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 95
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 27 caccatggcctgggctctgctgctcct 53
||||||||||||||||||||| |||||
Sbjct: 42 caccatggcctgggctctgctcctcct 68
>RF00952;mir-650;AAWR02038310.1/87959-87865 9796:Equus caballus
(horse)
Length = 95
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 27 caccatggcctgggctctgctgctcct 53
||||||||||||||||||||| |||||
Sbjct: 42 caccatggcctgggctctgctcctcct 68
>RF00952;mir-650;AANN01840108.1/4686-4777 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 17 aggacatctacaccatggcctgggctctgct 47
|||||||| |||||||||||||||||||||
Sbjct: 29 aggacatcaccaccatggcctgggctctgct 59
>RF00952;mir-650;ABRP01289756.1/6205-6113 132908:Pteropus vampyrus
(large flying fox)
Length = 93
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 catctacaccatggcctgggctc 43
|||||||||||||||||||||||
Sbjct: 34 catctacaccatggcctgggctc 56
>RF00952;mir-650;AAPY01440642.1/1292-1385 37347:Tupaia belangeri
(northern tree shrew)
Length = 94
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 27 caccatggcctgggctctgctgctcct 53
||||||||||||||||||||| |||||
Sbjct: 41 caccatggcctgggctctgctcctcct 67
>RF00952;mir-650;ABRT010402342.1/832-923 9478:Tarsius syrichta
(Philippine tarsier)
Length = 92
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 catctacaccatggcctgggctctgct 47
||||| |||||||||||||||||||||
Sbjct: 33 catctccaccatggcctgggctctgct 59
>RF00952;mir-650;AAGW01499587.1/2632-2723 9986:Oryctolagus
cuniculus (rabbit)
Length = 92
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 27 caccatggcctgggctctgctgctcct 53
||||||||||||||||||||| |||||
Sbjct: 39 caccatggcctgggctctgctcctcct 65
>RF00952;mir-650;AAFC03006141.1/7448-7356 9913:Bos taurus (cattle)
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 caccatggcctgggctctgct 47
|||||||||||||||||||||
Sbjct: 40 caccatggcctgggctctgct 60
>RF00952;mir-650;ABRN01253218.1/12975-13067 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 caccatggcctgggctctgct 47
|||||||||||||||||||||
Sbjct: 40 caccatggcctgggctctgct 60
>RF00952;mir-650;ACBE01380695.1/14347-14253 9685:Felis catus
(domestic cat)
Length = 95
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 catctacaccatggcctgggctctg 45
||||| |||||||||||||||||||
Sbjct: 36 catctgcaccatggcctgggctctg 60
>RF00952;mir-650;AACN010976540.1/395-303 9615:Canis lupus
familiaris (dog)
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 caccatggcctgggctctgct 47
|||||||||||||||||||||
Sbjct: 42 caccatggcctgggctctgct 62
