miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00952;mir-650;AK129585.1/1-79 9606:Homo sapiens (human)
Length = 79
Score = 95.6 bits (48), Expect = 7e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 3 tggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctattc 62
|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct: 1 tgggatctcaggaggcagcgctctcgggacgtctccgccatggcctgggctctgctgctc 60
Query: 63 ctcaccctcctc 74
||||||||||||
Sbjct: 61 ctcaccctcctc 72
>RF00952;mir-650;AANU01210640.1/17305-17211 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctat 60
|||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||
Sbjct: 5 gctggggtctcaggagacagtgctgtcgggacgtctccaccatggcctgggctctgctcc 64
Query: 61 tcctcaccct 70
||||||||||
Sbjct: 65 tcctcaccct 74
>RF00952;mir-650;AAWR02038310.1/87959-87865 9796:Equus caballus
(horse)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 3 tggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctattc 62
||||||||||| | |||| ||||| ||| ||||||||||||||| |||||||||| ||
Sbjct: 7 tggggtctcagaaagcagtgctcttggggcgtctccaccatggcctgggctctgctcctc 66
Query: 63 ctcaccctcctc 74
||||||||||||
Sbjct: 67 ctcaccctcctc 78
>RF00952;mir-650;AAPE01597063.1/4995-4901 59463:Myotis lucifugus
(little brown bat)
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 3 tggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctattc 62
||||||||||| ||||||||||||| || | |||||||||||| |||||||||| ||
Sbjct: 7 tggggtctcagaaggcagcgctctcagggcacctccaccatggcctgggctctgctcctc 66
Query: 63 ctcaccctcctc 74
|||| |||||||
Sbjct: 67 ctcagcctcctc 78
>RF00952;mir-650;AAPY01440642.1/1292-1385 37347:Tupaia belangeri
(northern tree shrew)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctat 60
||||||||||||| |||| | |||| ||| ||||||||||||||| ||||||||||
Sbjct: 5 gctggggtctcagcaggccgtgctcagggg-cgtctccaccatggcctgggctctgctcc 63
Query: 61 tcctcaccctcct 73
|||||||||||||
Sbjct: 64 tcctcaccctcct 76
>RF00952;mir-650;AANU01210643.1/9228-9138 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/74 (85%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctat 60
|||||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 5 gctggggtgtcaggaggcagcgctctc----agtctccaccatggcctgggctctgctcc 60
Query: 61 tcctcaccctcctc 74
||||||| ||||||
Sbjct: 61 tcctcactctcctc 74
>RF00952;mir-650;AACZ02233323.1/2086-1994 9598:Pan troglodytes
(chimpanzee)
Length = 93
Score = 56.0 bits (28), Expect = 6e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 23 ctctcgggacgtctccaccatggcgagggctctgctattcctcaccctcctc 74
|||| ||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct: 26 ctctggggacgtctccaccatggcctgggctctgctcctcctcagcctcctc 77
>RF00952;mir-650;AAGW01499587.1/2632-2723 9986:Oryctolagus
cuniculus (rabbit)
Length = 92
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 ctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctattcctcacc 68
||||||||||||| ||| ||| ||||| ||||||||| |||||||||| ||||||||
Sbjct: 12 ctcaggaggcagc--tctgggggcgtctgcaccatggcctgggctctgctcctcctcacc 69
Query: 69 ctcctc 74
||||||
Sbjct: 70 ctcctc 75
>RF00952;mir-650;AANN01442391.1/982-1071 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 34 tctccaccatggcgagggctctgctattcctcaccctcctc 74
||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 33 tctccaccatggcctgggccctgctcttcctcaccctcctc 73
>RF00952;mir-650;ABQO011210558.1/466-559 9315:Macropus eugenii
(tammar wallaby)
Length = 94
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 4 ggggtctcaggaggcagcgctctcgggacgtctccaccatggc 46
||||||||||| |||| ||||| |||| ||||||||||||||
Sbjct: 8 ggggtctcagggagcagagctctggggaagtctccaccatggc 50
>RF00952;mir-650;ABVD01676966.1/1117-1026 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 92
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 4 ggggtctcaggaggcagcgctctcgggacgtctccaccatggc 46
|||| |||||||||||| ||||| ||| | |||||||||||||
Sbjct: 7 ggggcctcaggaggcagagctctgggggcatctccaccatggc 49
>RF00952;mir-650;ABVD01922866.1/255-161 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 95
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 4 ggggtctcaggaggcagcgctctcgggacgtctccaccatggc 46
||||||||||||||||| ||||| ||| |||||| |||||||
Sbjct: 9 ggggtctcaggaggcagagctctgggggtgtctcctccatggc 51
>RF00952;mir-650;ABRT010277477.1/4788-4881 9478:Tarsius syrichta
(Philippine tarsier)
Length = 94
Score = 46.1 bits (23), Expect = 6e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 9 ctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctattcctcac 67
||||||||||||| ||| ||| | ||||||||||| | |||||||||| ||||||||
Sbjct: 12 ctcaggaggcagcagtcttggggcatctccaccatgacctgggctctgcttttcctcac 70
>RF00952;mir-650;AAWR02044583.1/8847-8754 9796:Equus caballus
(horse)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 5 gggtctcaggaggcagcgctctcgggacgtctccaccatggc 46
|||||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 9 gggtctcaggaggcagacctctcggga-gtccccaccatggc 49
>RF00952;mir-650;AANN01840108.1/4686-4777 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 37 ccaccatggcgagggctctgctattcctcaccctcctc 74
|||||||||| |||||||||| || ||||||||||||
Sbjct: 38 ccaccatggcctgggctctgctctttctcaccctcctc 75
>RF00952;mir-650;AAPY01823984.1/373-466 37347:Tupaia belangeri
(northern tree shrew)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 62/74 (83%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctat 60
||||||||||||| |||| | |||| ||| || |||||||||| | |||||||| | |
Sbjct: 5 gctggggtctcagcaggctgtgctcagggg-cgcctccaccatgtcccgggctctgttct 63
Query: 61 tcctcaccctcctc 74
||||||||||||||
Sbjct: 64 tcctcaccctcctc 77
>RF00952;mir-650;ABRT010343047.1/963-1056 9478:Tarsius syrichta
(Philippine tarsier)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 62/74 (83%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctat 60
||||||| |||||||||||| |||| | | | ||||||||||||| | ||||||||| |
Sbjct: 5 gctggggactcaggaggcaggactcttgaggcatctccaccatggcca-ggctctgctct 63
Query: 61 tcctcaccctcctc 74
|| ||||| |||||
Sbjct: 64 tcttcaccatcctc 77
>RF00952;mir-650;AAQQ01420000.1/447-353 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 95
Score = 44.1 bits (22), Expect = 2e-04
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagcgctctcgggacgtctccaccatggcgagggctctgctat 60
||||||| ||||||||||| | |||| || | || |||||||||| ||||| ||||
Sbjct: 5 gctgggggctcaggaggcaacattctcagggcatcaccaccatggcttgggctttgcttg 64
Query: 61 tcctcaccctcctc 74
||||||||||||||
Sbjct: 65 tcctcaccctcctc 78
>RF00952;mir-650;AAWR02038310.1/54887-54794 9796:Equus caballus
(horse)
Length = 94
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 34 tctccaccatggcgagggctctgctattcctcaccctcctc 74
||||||||||||| || |||||||| |||||||| |||||
Sbjct: 37 tctccaccatggccagtgctctgctcctcctcaccatcctc 77
>RF00952;mir-650;AAWR02021026.1/71268-71361 9796:Equus caballus
(horse)
Length = 94
Score = 42.1 bits (21), Expect = 0.001
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 3 tggggtctcaggaggcagcgctctcgggacgtctccaccat 43
|||||||||||||||||| ||||| ||| | ||||||||||
Sbjct: 7 tggggtctcaggaggcagagctct-ggggcatctccaccat 46
>RF00952;mir-650;ACBE01380694.1/5722-5629 9685:Felis catus
(domestic cat)
Length = 94
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 tggggtctcaggaggcagcgctctc 27
|||||||||||||||||| ||||||
Sbjct: 7 tggggtctcaggaggcagagctctc 31
