miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01028;mir-633;ABQO010208172.1/4364-4286 9315:Macropus eugenii
(tammar wallaby)
Length = 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 123 cccatttcacaggtgaggaaactgaggc 150
||||||| ||||||||||||||||||||
Sbjct: 39 cccattttacaggtgaggaaactgaggc 12
>RF01028;mir-633;ABQO011200409.1/194-115 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 117 attatgcccatttcacaggtgaggaaactgaggctc 152
||||| ||||||| |||| |||||||||||||||||
Sbjct: 45 attatccccattttacagctgaggaaactgaggctc 10
>RF00026;U6;AAPN01007138.1/24293-24421 9258:Ornithorhynchus anatinus
(platypus)
Length = 129
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 123 cccatttcacaggtgaggaaactgaggc 150
||||||| ||||||||||||||||||||
Sbjct: 9 cccattttacaggtgaggaaactgaggc 36
>RF01028;mir-633;ABQO010377175.1/1466-1545 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 117 attatgcccatttcacaggtgaggaaactgaggct 151
||||| ||||||| |||| ||||||||||||||||
Sbjct: 45 attatccccattttacagatgaggaaactgaggct 11
>RF00985;mir-640;ABQO010045939.1/2947-2850 9315:Macropus eugenii
(tammar wallaby)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 117 attatgcccatttcacaggtgaggaaactgaggct 151
||||| ||||||| |||| ||||||||||||||||
Sbjct: 66 attatccccattttacagatgaggaaactgaggct 32
>RF01028;mir-633;ABRR01220244.1/1452-1374 30538:Lama pacos (alpaca)
Length = 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 125 catttcacaggtgaggaaactgaggc 150
|||||||||| |||||||||||||||
Sbjct: 37 catttcacagatgaggaaactgaggc 12
>RF00985;mir-640;ABQO010050764.1/4262-4166 9315:Macropus eugenii
(tammar wallaby)
Length = 97
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 117 attatgcccatttcacaggtgaggaaactgaggc 150
||||| ||||||| |||| |||||||||||||||
Sbjct: 66 attatccccattttacagttgaggaaactgaggc 33
>RF00985;mir-640;ABQO010575445.1/1875-1778 9315:Macropus eugenii
(tammar wallaby)
Length = 98
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 118 ttatgcccatttcacaggtgaggaaactgaggct 151
|||| ||||||| |||| ||||||||||||||||
Sbjct: 65 ttatccccattttacagatgaggaaactgaggct 32
