miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 61.9 bits (31), Expect = 7e-11
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 2 tattaggttggtgcgcacagaaattgtggtatttgccattacctttcataggaaaagcca 61
|||||||||||||| | ||||| |||||| ||||||||||| || || | |||| |||
Sbjct: 4 tattaggttggtgcaaa-agaaactgtggtttttgccattactttcaatggcaaaaacca 62
Query: 62 cagttacttttgcaccaacctaa 84
|| ||||||||||||||||||||
Sbjct: 63 caattacttttgcaccaacctaa 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| |||||||| |||||||||||||||||
Sbjct: 36 aaaaaccacagtttcttttgcaccaacctaa 6
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 61.9 bits (31), Expect = 7e-11
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 2 tattaggttggtgcgcacagaaattgtggtatttgccattacctttcataggaaaagcca 61
|||||||||||||| | ||||| |||||| ||||||||||| || || | |||| |||
Sbjct: 94 tattaggttggtgcaaa-agaaactgtggtttttgccattactttcaatggcaaaaacca 36
Query: 62 cagttacttttgcaccaacctaa 84
|| ||||||||||||||||||||
Sbjct: 35 caattacttttgcaccaacctaa 13
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| |||||||| |||||||||||||||||
Sbjct: 62 aaaaaccacagtttcttttgcaccaacctaa 92
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 61.9 bits (31), Expect = 7e-11
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 2 tattaggttggtgcgcacagaaattgtggtatttgccattacctttcataggaaaagcca 61
|||||||||||||| | ||||| |||||| ||||||||||| || || | |||| |||
Sbjct: 94 tattaggttggtgcaaa-agaaactgtggtttttgccattactttcaatggcaaaaacca 36
Query: 62 cagttacttttgcaccaacctaa 84
|| ||||||||||||||||||||
Sbjct: 35 caattacttttgcaccaacctaa 13
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| |||||||| |||||||||||||||||
Sbjct: 62 aaaaaccacagtttcttttgcaccaacctaa 92
>27999_mml-mir-548d:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 20 agaaattgtggtatttgccattacctttcataggaaa-agccacagttacttttgcacca 78
|||||||||||| ||||||||||| ||| ||||| || | ||||| ||||||||||||||
Sbjct: 77 agaaattgtggtttttgccattactttt-ataggcaagaaccacaattacttttgcacca 19
Query: 79 acctaa 84
||||||
Sbjct: 18 acctaa 13
>28000_mml-mir-548d:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 20 agaaattgtggtatttgccattacctttcataggaaa-agccacagttacttttgcacca 78
|||||||||||| ||||||||||| ||| ||||| || | ||||| ||||||||||||||
Sbjct: 77 agaaattgtggtttttgccattactttt-ataggcaagaaccacaattacttttgcacca 19
Query: 79 acctaa 84
||||||
Sbjct: 18 acctaa 13
>28799_hsa-mir-548aa-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 6e-08
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 20 agaaattgtggtatttgccattacctttcatagg-aaaagccacagttacttttgcacca 78
||||| |||||| ||||||||||| ||| | ||| |||| ||||| ||||||||||||||
Sbjct: 21 agaaactgtggtttttgccattactttt-acaggcaaaaaccacaattacttttgcacca 79
Query: 79 acctaa 84
||||||
Sbjct: 80 acctaa 85
>28820_hsa-mir-548d-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 6e-08
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 20 agaaattgtggtatttgccattacctttcatagg-aaaagccacagttacttttgcacca 78
||||| |||||| ||||||||||| ||| | ||| |||| ||||| ||||||||||||||
Sbjct: 77 agaaactgtggtttttgccattactttt-acaggcaaaaaccacaattacttttgcacca 19
Query: 79 acctaa 84
||||||
Sbjct: 18 acctaa 13
>28821_hsa-mir-548d-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 6e-08
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 20 agaaattgtggtatttgccattacctttcatagg-aaaagccacagttacttttgcacca 78
||||| |||||| ||||||||||| ||| | ||| |||| ||||| ||||||||||||||
Sbjct: 77 agaaactgtggtttttgccattactttt-acaggcaaaaaccacaattacttttgcacca 19
Query: 79 acctaa 84
||||||
Sbjct: 18 acctaa 13
>28803_hsa-mir-548ad:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaaca 86
|||| ||||| ||||||||||||||||||||||
Sbjct: 34 aaaaaccacaattacttttgcaccaacctaaca 2
>28836_hsa-mir-548i-1:mirbase
Length = 149
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||||||||
Sbjct: 78 tttgccattacttttaatggcaaaatccgcaattacttttgcaccaacctaa 27
>30477_ptr-mir-548i-1:mirbase
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||||||||
Sbjct: 78 tttgccattacgtttaatggcaaaatccgcaattacttttgcaccaacctaa 27
>30479_ptr-mir-548i-3:mirbase
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||||||||
Sbjct: 77 tttgccattacttttaatggcaaaatccgcaattacttttgcaccaacctaa 26
>30480_ptr-mir-548i-4:mirbase
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||||||||
Sbjct: 78 tttgccattacttttaatggcaaaatccgcaattacttttgcaccaacctaa 27
>30481_ptr-mir-548i-5:mirbase
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||||||||
Sbjct: 77 tttgccattacttttaatggcaaaatccgcaattacttttgcaccaacctaa 26
>30482_ptr-mir-548i-6:mirbase
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||||||||
Sbjct: 77 tttgccattacttttaatggcaaaatccgcaattacttttgcaccaacctaa 26
>28852_hsa-mir-548v:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||||| |||||||||||||||||| |||||
Sbjct: 46 aaaagctacagttacttttgcaccagcctaa 76
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 58 ccacaattacttttgcaccaacctaa 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 23 ttacttttgcaccaacctaa 4
>27997_mml-mir-548b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 56 aagccacagttacttttgcaccaacctaa 84
||||| || ||||||||||||||||||||
Sbjct: 41 aagccccaattacttttgcaccaacctaa 13
>28841_hsa-mir-548k:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 66 tacttttgcaccaacctaaca 86
|||||||||||||||||||||
Sbjct: 38 tacttttgcaccaacctaaca 18
>28844_hsa-mir-548n:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacct 82
|||| ||||| ||||||||||||||||||
Sbjct: 29 aaaatccacaattacttttgcaccaacct 1
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 56 ttacttttgcaccaacctaa 75
>28850_hsa-mir-548t:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacct 82
|||| ||||| ||||||||||||||||||
Sbjct: 46 aaaaaccacaattacttttgcaccaacct 74
>30484_ptr-mir-548k:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 66 tacttttgcaccaacctaaca 86
|||||||||||||||||||||
Sbjct: 37 tacttttgcaccaacctaaca 17
>28002_mml-mir-548f:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 22 ttacttttgcaccaacctaa 3
>28801_hsa-mir-548ab:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 49 ataggaaaagccacagttacttttgcaccaac 80
|||| |||| ||||| ||||||||||||||||
Sbjct: 34 atagcaaaatccacaattacttttgcaccaac 3
>28802_hsa-mir-548ac:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 49 ataggaaaagccacagttacttttgcaccaacctaa 84
|||| |||| ||||| | ||||||||||||||||||
Sbjct: 39 atagcaaaaaccacaataacttttgcaccaacctaa 4
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 26 ttacttttgcaccaacctaa 7
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 32 ttacttttgcaccaacctaa 13
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 32 ttacttttgcaccaacctaa 13
>28825_hsa-mir-548f-1:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 21 ttacttttgcaccaacctaa 2
>28826_hsa-mir-548f-2:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 70 ttacttttgcaccaacctaa 89
>28827_hsa-mir-548f-3:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 65 ttacttttgcaccaacctaa 84
>28828_hsa-mir-548f-4:mirbase
Length = 105
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 33 ttacttttgcaccaacctaa 14
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 36 ttacttttgcaccaacctaa 17
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 77 ttacttttgcaccaacctaa 96
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 24 ttacttttgcaccaacctaa 5
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 83 ttacttttgcaccaacctaa 102
>28837_hsa-mir-548i-2:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 2e-04
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||| ||||
Sbjct: 78 tttgccattacttttaatggcaaaatccgcaattacttttgcaccaaactaa 27
>28838_hsa-mir-548i-3:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 2e-04
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || |||||||||||| |||||||
Sbjct: 78 tttgccattacttttaatggcaaaatccgcaattacttttgcacaaacctaa 27
>28853_hsa-mir-548w:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 62 cagttacttttgcaccaacc 81
||||||||||||||||||||
Sbjct: 20 cagttacttttgcaccaacc 1
>28856_hsa-mir-548y:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 30 ttacttttgcaccaacctaa 11
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaaccta 83
|||||||||||||||||||
Sbjct: 71 ttacttttgcaccaaccta 89
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 66 ttacttttgcaccaacctaa 85
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 32 ttacttttgcaccaacctaa 13
>30474_ptr-mir-548f-1:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 59 ttacttttgcaccaacctaa 78
>30475_ptr-mir-548f-2:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 65 ttacttttgcaccaacctaa 84
>30478_ptr-mir-548i-2:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaacctaa 84
||||||||||||||||||||
Sbjct: 46 ttacttttgcaccaacctaa 27
>27996_mml-mir-548a:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaac 80
|||| ||||| ||||||||||||||||
Sbjct: 43 aaaaaccacaattacttttgcaccaac 17
>28001_mml-mir-548e:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 65 ttacttttgcaccaaccta 83
|||||||||||||||||||
Sbjct: 32 ttacttttgcaccaaccta 14
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 cagttacttttgcaccaac 80
|||||||||||||||||||
Sbjct: 70 cagttacttttgcaccaac 88
>28815_hsa-mir-548an:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 54/63 (85%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 23 aattgtggtatttgccattacctttcatagg-aaaagccacagttacttttgcaccaacc 81
||||| ||| ||||||||||| ||| ||||| |||| ||||| | ||||||||||||||
Sbjct: 64 aattgcggtttttgccattactttt-ataggcaaaaaccacaatgccttttgcaccaacc 6
Query: 82 taa 84
|||
Sbjct: 5 taa 3
>28842_hsa-mir-548l:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 66 tacttttgcaccaacctaa 84
|||||||||||||||||||
Sbjct: 21 tacttttgcaccaacctaa 3
>28843_hsa-mir-548m:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||||||||| ||| |||||||||||||||
Sbjct: 51 aaaagccacaaatacctttgcaccaacctaa 81
>28845_hsa-mir-548o:mirbase
Length = 114
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 cagttacttttgcaccaac 80
|||||||||||||||||||
Sbjct: 96 cagttacttttgcaccaac 114
>30470_ptr-mir-548a-1:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaac 80
|||| ||||| ||||||||||||||||
Sbjct: 42 aaaaaccacaattacttttgcaccaac 16
>30471_ptr-mir-548a-2:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 62 cagttacttttgcaccaacctaa 84
||||||||||||||| |||||||
Sbjct: 33 cagttacttttgcacaaacctaa 11
>30485_ptr-mir-548l:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 66 tacttttgcaccaacctaa 84
|||||||||||||||||||
Sbjct: 21 tacttttgcaccaacctaa 3
>30486_ptr-mir-548n:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaaccta 83
|||||||||||||||||||
Sbjct: 57 ttacttttgcaccaaccta 75
