miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41064_ghr-MIR479:mirbase
Length = 97
Score = 192 bits (97), Expect = 5e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 26 ggaggagtagacacgacgtgatattggttcggctcatcttattgtgattaaaaatttcaa 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaggagtagacacgacgtgatattggttcggctcatcttattgtgattaaaaatttcaa 60
Query: 86 ggcgagccgaatcaatatcactcatgtatgctttttt 122
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcgagccgaatcaatatcactcatgtatgctttttt 97
>41392_ptc-MIR171l:mirbase
Length = 112
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| |||||||||
Sbjct: 78 cgagccgaatcaatatcactcttgtatgctt 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 26 ggaggagtagacacgacgtgatattggttcggctcatctt 65
|||| |||||||||| ||||||||||| |||||||||||
Sbjct: 1 ggagaagtagacacggtgtgatattggtccggctcatctt 40
>41258_csi-MIR479:mirbase
Length = 147
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| |||||||||
Sbjct: 97 cgagccgaatcaatatcactcttgtatgctt 127
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 26 ggaggagtagacacgacgtgatattggttcggctcatctta 66
|||| |||||||| | ||||||||||||||||||||||||
Sbjct: 4 ggagaagtagacatggtgtgatattggttcggctcatctta 44
>41232_csi-MIR171b:mirbase
Length = 165
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| |||||||||
Sbjct: 122 cgagccgaatcaatatcactcttgtatgctt 152
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 26 ggaggagtagacacgacgtgatattggttcggctcatctta 66
|||| |||||||| | ||||||||||||||||||||||||
Sbjct: 29 ggagaagtagacatggtgtgatattggttcggctcatctta 69
>40456_gma-MIR171b:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 33 tagacacgacgtgatattggttcggctcatctta 66
|||||||| |||||||||||| ||||||||||||
Sbjct: 1 tagacacggcgtgatattggtacggctcatctta 34
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| ||| |||||
Sbjct: 62 cgagccgaatcaatatcactcttgtttgctt 92
>40455_gma-MIR171b:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 33 tagacacgacgtgatattggttcggctcatctta 66
|||||||| |||||||||||| ||||||||||||
Sbjct: 1 tagacacggcgtgatattggtacggctcatctta 34
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| ||| |||||
Sbjct: 62 cgagccgaatcaatatcactcttgtttgctt 92
>41686_vvi-MIR479:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||| ||||||||||| |||||||||
Sbjct: 63 cgagccgaaccaatatcactcttgtatgctt 93
>41394_ptc-MIR171n:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| |||| ||||
Sbjct: 70 cgagccgaatcaatatcactcttgtacgctt 100
>41393_ptc-MIR171m:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| |||| ||||
Sbjct: 70 cgagccgaatcaatatcactcttgtacgctt 100
>42771_zma-MIR171k:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtat 114
|||||||| |||||||||||||||||
Sbjct: 67 gagccgaaccaatatcactcatgtat 92
>42551_sbi-MIR171f:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtat 114
|||||||| |||||||||||||||||
Sbjct: 82 gagccgaaccaatatcactcatgtat 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 43 gtgatattggttcggctcatc 63
|||||||||||||||||||||
Sbjct: 99 gtgatattggttcggctcatc 79
>42550_sbi-MIR171e:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtat 114
|||||||| |||||||||||||||||
Sbjct: 87 gagccgaaccaatatcactcatgtat 112
>41988_osa-MIR171h:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtat 114
|||||||| |||||||||||||||||
Sbjct: 56 gagccgaaccaatatcactcatgtat 81
>42768_zma-MIR171h:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgta 113
|||||||| ||||||||||||||||
Sbjct: 87 gagccgaaccaatatcactcatgta 111
>41499_ptc-MIR479:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactc 108
|||||||||||||||||||||
Sbjct: 64 cgagccgaatcaatatcactc 84
