miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 67 aattcgattttgccaaaggagatttgccctgccattcactc 107
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 aattcgattttgccaaaggagatttgccctgccattcactc 96
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccatt 102
||||||||||||||||||||||||||||
Sbjct: 68 tttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccatt 102
||||||||||||||||||||||||||||
Sbjct: 68 tttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 74 ttttgccaaaggagatttgccctgccattc 103
||||||||||||||| ||||||||||||||
Sbjct: 69 ttttgccaaaggagaattgccctgccattc 98
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 74 ttttgccaaaggagatttgccctgccattc 103
||||||||||||||| ||||||||||||||
Sbjct: 59 ttttgccaaaggagaattgccctgccattc 88
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccattc 103
|||||||||||||| ||||||||||||||
Sbjct: 95 tttgccaaaggagaattgccctgccattc 123
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
|||||||||||| |||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattca 92
>RF00445;mir-399;AC160628.37/103972-103869 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccatt 102
|||||||||| |||||||||||||||||
Sbjct: 72 tttgccaaagaagatttgccctgccatt 99
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ttgccaaaggagatttgccctgccattc 103
||||||||||||| ||||||||||||||
Sbjct: 81 ttgccaaaggagaattgccctgccattc 108
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
|||||||||||| |||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccattca 110
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
|||||||||||| |||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattc 103
|||||||||||| ||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccattc 109
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattcactc 107
||||||||||||||||||| || ||||||||
Sbjct: 89 tgccaaaggagatttgcccagcgattcactc 119
