miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01010;mir-632;AAGU02628656.1/415-322 9785:Loxodonta africana
(African savanna elephant)
Length = 94
Score = 75.8 bits (38), Expect = 2e-13
Identities = 48/50 (96%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 7 ggccgtcggccattt-gtgtctgcttcctgtgggacgtggtggtagccgt 55
||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 45 ggccgtcggccattttgtgtctgtttcctgtgggacgtggtggtagccgt 94
>RF01010;mir-632;CABD01178489.1/2798-2705 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 94
Score = 67.9 bits (34), Expect = 4e-11
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 7 ggccgtcggccattt-gtgtctgcttcctgtgggacgtggtggtag 51
||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 45 ggccgtcggccattttgtgtctgcttcctgtgggacgcggtggtag 90
>RF01010;mir-632;AAYZ01474155.1/733-640 9978:Ochotona princeps
(American pika)
Length = 94
Score = 52.0 bits (26), Expect = 3e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 11 gtcggccattt-gtgtctgcttcctgtgggacgtggtggtagccgt 55
||||||||||| ||||||| |||||| |||||| ||||||||||||
Sbjct: 49 gtcggccattttgtgtctgtttcctgagggacgcggtggtagccgt 94
>RF01010;mir-632;AAGW01337624.1/6490-6583 9986:Oryctolagus
cuniculus (rabbit)
Length = 94
Score = 52.0 bits (26), Expect = 3e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 11 gtcggccattt-gtgtctgcttcctgtgggacgtggtggtagccgt 55
||||||||||| ||||||| ||||||||||||| ||||| ||||||
Sbjct: 49 gtcggccattttgtgtctgtttcctgtgggacgcggtgggagccgt 94
>RF01010;mir-632;ABRQ01763187.1/1091-999 9813:Procavia capensis
(cape rock hyrax)
Length = 93
Score = 52.0 bits (26), Expect = 3e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 7 ggccgtcggccattt-gtgtctgcttcctgtgggacgtggtggtag 51
||||||||||||||| ||| ||| |||||| |||||||||||||||
Sbjct: 44 ggccgtcggccattttgtgcctgtttcctgcgggacgtggtggtag 89
>RF01010;mir-632;AAKN02033149.1/3386-3291 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 50.1 bits (25), Expect = 1e-05
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 10 cgtcggccattt-gtgtctgcttcctgtgggac 41
|||||||||||| ||||||||||||||||||||
Sbjct: 47 cgtcggccattttgtgtctgcttcctgtgggac 79
>RF01010;mir-632;ABVD01081068.1/369-276 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 11 gtcggcca-tttgtgtctgcttcctgtgggacgtggtggtagccgt 55
|||||||| |||||||||| |||||||| |||| ||| ||||||||
Sbjct: 49 gtcggccattttgtgtctgtttcctgtgagacgcggtcgtagccgt 94
