miRNEST 2.0, an integrative microRNA resource :: BLAST
>48499_ghr-miR390b:pmrd
Length = 132
Score = 262 bits (132), Expect = 6e-71
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 5 gtatggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtatggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagc 60
Query: 65 tttcatgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttcatgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggt 120
Query: 125 tcttcttgcttg 136
||||||||||||
Sbjct: 121 tcttcttgcttg 132
>48498_ghr-miR390a:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 8 tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 60
Query: 68 catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 120
Query: 128 tctt 131
||||
Sbjct: 121 tctt 124
>48500_ghr-miR390c:pmrd
Length = 114
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
Query: 72 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
>54848_vvi-miR390:pmrd
Length = 140
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatg 45
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcatcggttcttc 129
|||||||| ||||||||||||| ||||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatg 45
||||||||||||||||||||||||||||||||||
Sbjct: 4 agaatctgttaagctcaggagggatagcgccatg 37
>51716_ptc-miR390a:pmrd
Length = 119
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatg 45
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgccatg 45
||||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcatcggttcttctt 131
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
>46995_ath-miR390a:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgccatg 45
||||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcatcggttcttctt 131
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
>51719_ptc-miR390d:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgcc 42
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagttt 117
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>51718_ptc-miR390c:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 15 atctgttaagctcaggagggatagcgccatg 45
|||||||||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>51717_ptc-miR390b:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgcc 42
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcat 120
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>48371_bna-miR390b:pmrd
Length = 105
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgccat 44
||||||||||| |||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccat 40
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcatcggttcttctt 131
||||| ||||||||||||||||| || |||||||
Sbjct: 67 gcgctgtccatcctgagtttcattggctcttctt 100
>48372_bna-miR390c:pmrd
Length = 128
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcatcggttcttcttgctt 135
||||||||||||||||||| ||| | ||||||||||||
Sbjct: 85 gcgctatccatcctgagttccatggcttcttcttgctt 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgttaagctcaggagggatagcgccatg 45
|||| ||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46
>48370_bna-miR390a:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgttaagctcaggagggatagcgccatg 45
|||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcatcggttcttcttgctt 135
||||||||||||||||||| || | ||||||||||||
Sbjct: 95 gcgctatccatcctgagttctatggcttcttcttgctt 132
>46996_ath-miR390b:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccatgg 46
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagtttcatcggttcttctt 131
||||||||||||||||||| ||| | ||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 gttaagctcaggagggatagcgcc 42
||||||||||||||||||||||||
Sbjct: 1 gttaagctcaggagggatagcgcc 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagttt 117
||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91
>48575_gma-miR390b:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagc 39
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccatg 45
||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatg 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagttt 117
||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccat 44
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccat 44
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gcgctatccatcctgagttt 117
||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90
>48916_osa-miR390:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 5 gtatggaagaatctgttaagctcaggagggatagcgcc 42
|||||||| |||| | |||||||||||||||||||||
Sbjct: 2 gtatggaacaatccttgaagctcaggagggatagcgcc 39
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctcaggagggatagcgcc 42
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctcaggagggatagcgcc 42
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
