miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31236_ppy-mir-675b:mirbase
Length = 95
Score = 135 bits (68), Expect = 5e-33
Identities = 82/84 (97%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tgcggcccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgcc 60
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 9 tgcggcccagggtctggtgcggagagggcccaca-gtggacttggt-gacgctgtatgcc 66
Query: 61 ctcaccgctcagcccctggggctg 84
||||||||||||||||||||||||
Sbjct: 67 ctcaccgctcagcccctggggctg 90
>28990_hsa-mir-675:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 73/75 (97%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 6 cccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgccctcac 65
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccaca-gtggacttggt-gacgctgtatgccctcac 58
Query: 66 cgctcagcccctggg 80
|||||||||||||||
Sbjct: 59 cgctcagcccctggg 73
>31235_ppy-mir-675a:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 73/75 (97%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 6 cccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgccctcac 65
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccaca-gtggacttggt-gacgctgtatgccctcac 58
Query: 66 cgctcagcccctggg 80
|||||||||||||||
Sbjct: 59 cgctcagcccctggg 73
>28110_mml-mir-675:mirbase
Length = 73
Score = 109 bits (55), Expect = 3e-25
Identities = 72/75 (96%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 6 cccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgccctcac 65
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccaca-gtggacttggt-gacactgtatgccctcac 58
Query: 66 cgctcagcccctggg 80
|||||||||||||||
Sbjct: 59 cgctcagcccctggg 73
>32290_mmu-mir-675:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 1 tgcggcccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgcc 60
|||||||||||| |||||||||| |||||||||| ||||||||||| || |||||||||
Sbjct: 1 tgcggcccagggactggtgcggaaagggcccaca-gtggacttggt--acactgtatgcc 57
Query: 61 ctcaccgctcagcccctggg 80
|| ||||||||| |||||||
Sbjct: 58 ctaaccgctcagtccctggg 77
>32291_mmu-mir-675:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 1 tgcggcccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgcc 60
|||||||||||| |||||||||| |||||||||| ||||||||||| || |||||||||
Sbjct: 1 tgcggcccagggactggtgcggaaagggcccaca-gtggacttggt--acactgtatgcc 57
Query: 61 ctcaccgctcagcccctggg 80
|| ||||||||| |||||||
Sbjct: 58 ctaaccgctcagtccctggg 77
>32979_rno-mir-675:mirbase
Length = 84
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 1 tgcggcccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgcc 60
|||||||||||| |||||||||| |||||||||| ||||||||||| | |||||||||
Sbjct: 1 tgcggcccagggactggtgcggaaagggcccaca-gtggacttggt--gcactgtatgcc 57
Query: 61 ctcaccgctcagcccctggg 80
|| ||||||||| |||||||
Sbjct: 58 ctaaccgctcagtccctggg 77
>27256_eca-mir-675:mirbase
Length = 73
Score = 61.9 bits (31), Expect = 7e-11
Identities = 66/75 (88%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 6 cccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgccctcac 65
||||||| |||| |||||||||||||||| ||| ||| | |||| ||||||||| ||||
Sbjct: 1 cccaggggctggcgcggagagggcccaca-gtgcactcag-tgacactgtatgccttcac 58
Query: 66 cgctcagcccctggg 80
|||||||||||||||
Sbjct: 59 cgctcagcccctggg 73
