miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 77.8 bits (39), Expect = 2e-14
Identities = 62/67 (92%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 14 ctggtgcggagagggcccacatgtggacttggttgacgctgtatgccctcaccgctcagc 73
|||| |||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 9 ctggcgcggagagggcccaca-gtggacttggt-gacactgtatgccctaaccgctcagc 66
Query: 74 ccctggg 80
|||||||
Sbjct: 67 ccctggg 73
>RF00897;mir-675;AF190057.1/504-575 9685:Felis catus (domestic
cat)
Length = 72
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 tgtatgccctcaccgctcagcccctggg 80
||||||||||||||||||||||||||||
Sbjct: 45 tgtatgccctcaccgctcagcccctggg 72
>RF00897;mir-675;AF190056.1/465-536 13125:Lynx lynx (Eurasian
lynx)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 63/71 (88%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 6 cccagggtctggtgcggagagggcccacatgtggacttggttgacgctgtatgccctcac 65
|||||||||||| ||||||||| |||||| | | ||||||| ||| ||||||||| ||||
Sbjct: 1 cccagggtctggcgcggagagg-cccaca-gcgtacttggt-gacactgtatgccttcac 57
Query: 66 cgctcagcccc 76
|||||||||||
Sbjct: 58 cgctcagcccc 68
>RF00897;mir-675;AF214115.1/794-866 230844:Peromyscus maniculatus
bairdii (prairie deer mouse)
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 ctgtatgccctcaccgctcagcccctggg 80
||||||||||| |||||||||||||||||
Sbjct: 45 ctgtatgccctaaccgctcagcccctggg 73
