miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31236_ppy-mir-675b:mirbase
Length = 95
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcac 71
Query: 61 cgctcagcccctgggg 76
||||||||||||||||
Sbjct: 72 cgctcagcccctgggg 87
>28990_hsa-mir-675:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 3 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 63 ctcagcccctggg 75
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
>31235_ppy-mir-675a:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 3 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 63 ctcagcccctggg 75
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
>28110_mml-mir-675:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 62
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 60
Query: 63 ctcagcccctggg 75
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
>32290_mmu-mir-675:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcac 60
||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||| ||
Sbjct: 4 ggcccagggactggtgcggaaagggcccacagtggacttggt-acactgtatgccctaac 62
Query: 61 cgctcagcccctggg 75
||||||| |||||||
Sbjct: 63 cgctcagtccctggg 77
>32291_mmu-mir-675:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcac 60
||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||| ||
Sbjct: 4 ggcccagggactggtgcggaaagggcccacagtggacttggt-acactgtatgccctaac 62
Query: 61 cgctcagcccctggg 75
||||||| |||||||
Sbjct: 63 cgctcagtccctggg 77
>32979_rno-mir-675:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcac 60
||||||||| |||||||||| |||||||||||||||||||||| | ||||||||||| ||
Sbjct: 4 ggcccagggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccctaac 62
Query: 61 cgctcagcccctggg 75
||||||| |||||||
Sbjct: 63 cgctcagtccctggg 77
>27256_eca-mir-675:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 3 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 62
||||||| |||| ||||||||||||||||||| ||| ||||| ||||||||| ||||||
Sbjct: 1 cccaggggctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccg 60
Query: 63 ctcagcccctggg 75
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
