miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 105 bits (53), Expect = 8e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 11 ctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccgctcagccc 70
|||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 9 ctggcgcggagagggcccacagtggacttggtgacactgtatgccctaaccgctcagccc 68
Query: 71 ctggg 75
|||||
Sbjct: 69 ctggg 73
>RF00897;mir-675;AF190056.1/465-536 13125:Lynx lynx (Eurasian
lynx)
Length = 72
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 3 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 62
|||||||||||| ||||||||| ||||||| | |||||||||| ||||||||| ||||||
Sbjct: 1 cccagggtctggcgcggagagg-cccacagcgtacttggtgacactgtatgccttcaccg 59
Query: 63 ctcagcccc 71
|||||||||
Sbjct: 60 ctcagcccc 68
>RF00897;mir-675;AF190055.1/453-521 50724:Thomomys monticola
(mountain pocket gopher)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 27 ccacagtggacttggtgacgctgtatgccctcaccgctcagcccctggg 75
|||||||||||||| | |||||||||| ||| |||||||||||||||||
Sbjct: 22 ccacagtggacttgttcacgctgtatg-cctaaccgctcagcccctggg 69
>RF00897;mir-675;AF190057.1/504-575 9685:Felis catus (domestic
cat)
Length = 72
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 tgtatgccctcaccgctcagcccctggg 75
||||||||||||||||||||||||||||
Sbjct: 45 tgtatgccctcaccgctcagcccctggg 72
>RF00897;mir-675;AF214115.1/794-866 230844:Peromyscus maniculatus
bairdii (prairie deer mouse)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 11 ctggtgcggagagggcccacagtggact-tggtgacgctgtatgccctcaccgctcagcc 69
|||| ||||| |||||||||||||||| | ||| | ||||||||||| |||||||||||
Sbjct: 9 ctggcgcggaaagggcccacagtggacgcttgtg-cactgtatgccctaaccgctcagcc 67
Query: 70 cctggg 75
||||||
Sbjct: 68 cctggg 73
