miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48493_ghr-miR162a:pmrd
Length = 148
Score = 192 bits (97), Expect = 4e-50
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 1 gttaaggcgctggatgcagaggtttatcgatcgattcatgtatttgtgttattctcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gttaaggcgctggatgcagaggtttatcgatcgattcatgtatttgtgttattctcacaa 64
Query: 61 caaaattctcaggaagagatcgatgaaccgctgcctc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 63 caaaattctcaggaagagatcgatgaaccgctgcctc 27
>48423_cpa-miR162a:pmrd
Length = 109
Score = 91.7 bits (46), Expect = 1e-19
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 8 cgctggatgcagaggtttatcgatcgattcatgtatttgtgttattctcacaacaaaatt 67
|||||||||||||||||||||||||||||||||| | |||| | || |||| || |||||
Sbjct: 102 cgctggatgcagaggtttatcgatcgattcatgt-tctgtgat-ttttcac-accaaatt 46
Query: 68 ctcaggaagagatcgatgaaccgctgcctc 97
| ||||||||||||||||||||||||||||
Sbjct: 45 cccaggaagagatcgatgaaccgctgcctc 16
>54387_rco-miR162:pmrd
Length = 96
Score = 77.8 bits (39), Expect = 1e-15
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattcatg-tatttgtgttattctcacaacaaaat- 66
|||||||||||||||||||||||||||||||| ||| | || | ||||||||||||
Sbjct: 96 gctggatgcagaggtttatcgatcgattcatgcgttttatttttgtttcacaacaaaatc 37
Query: 67 tctcaggaagagatcgatgaaccgctgcctc 97
| ||||||||||||||||||||||||||||
Sbjct: 36 ttccaggaagagatcgatgaaccgctgcctc 6
>48545_gma-miR162a:pmrd
Length = 102
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 7 gcgctggatgcagaggtttatcgatcgattcatg 40
||||||||||||||||||||||||||||||||||
Sbjct: 96 gcgctggatgcagaggtttatcgatcgattcatg 63
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 69 tcaggaagagatcgatgaaccgctgc 94
||||||||||||||||||||||||||
Sbjct: 41 tcaggaagagatcgatgaaccgctgc 16
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 7 gcgctggatgcagaggtttatcgatcgattcatgt 41
||||||||||||||||||||||||||| |||||||
Sbjct: 5 gcgctggatgcagaggtttatcgatcggttcatgt 39
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 7 gcgctggatgcagaggtttatcgatcgattcatgt 41
||||||||||||||||||||||||||| |||||||
Sbjct: 5 gcgctggatgcagaggtttatcgatcggttcatgt 39
>51616_ptc-miR162a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 7 gcgctggatgcagaggtttatcgatcgattcatgt 41
||||||||||||||||||||||||||| |||||||
Sbjct: 101 gcgctggatgcagaggtttatcgatcggttcatgt 67
>48682_llu-miR162:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattcatg 40
|||||||||||||||||||||||||||||||
Sbjct: 80 ctggatgcagaggtttatcgatcgattcatg 50
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 7 gcgctggatgcagaggtttatcgatcgattc 37
|||||||||||||||||||||||||||||||
Sbjct: 12 gcgctggatgcagaggtttatcgatcgattc 42
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 65 attctcaggaagagatcgatgaaccgctgcctc 97
|||| |||||| ||||||||||||||||||||
Sbjct: 67 attcacaggaattgatcgatgaaccgctgcctc 99
>46938_ath-miR162b:pmrd
Length = 111
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 7 gcgctggatgcagaggtttatcgatcgattc 37
|||||||||||||||||||||||||||||||
Sbjct: 102 gcgctggatgcagaggtttatcgatcgattc 72
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 65 attctcaggaagagatcgatgaaccgctgcctc 97
|||| |||||| ||||||||||||||||||||
Sbjct: 47 attcacaggaattgatcgatgaaccgctgcctc 15
>46937_ath-miR162a:pmrd
Length = 140
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 8 cgctggatgcagaggtttatcgatcgattcatg 40
||||||||||||||||||||||||| |||||||
Sbjct: 111 cgctggatgcagaggtttatcgatctattcatg 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 70 caggaagagatcgatgaaccgctgcctc 97
||||||||||||||||||||||||||||
Sbjct: 55 caggaagagatcgatgaaccgctgcctc 28
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||||||||||||||||||
Sbjct: 163 ctggatgcagaggtttatcgatcgattc 136
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattcatgt 41
||||||||||||||||||||| ||||||||||
Sbjct: 87 ctggatgcagaggtttatcgaccgattcatgt 56
>48690_mdo-miR162:pmrd
Length = 88
Score = 56.0 bits (28), Expect = 5e-09
Identities = 76/88 (86%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattcatgtatttgtgttattctcacaacaaaattct 69
||||||||| ||||||||||| ||||||||| | |||||| | |||||||||||| |||
Sbjct: 88 ctggatgcaaaggtttatcgaccgattcatg-aactgtgtt-tactcacaacaaaa-tct 32
Query: 70 caggaagagatcgatgaaccgctgcctc 97
|| || |||||||||||||| ||||||
Sbjct: 31 cataaacagatcgatgaaccgatgcctc 4
>54784_vvi-miR162:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 73/87 (83%), Gaps = 6/87 (6%)
Strand = Plus / Minus
Query: 8 cgctggatgcagaggtttatcgatcgattcatgtatttgtgttattctcacaacaaaatt 67
||||||||||||||||||||||| |||||| || | || | || ||||||||| |
Sbjct: 95 cgctggatgcagaggtttatcgaccgattcttga---tctgcttttttcacaacaa---t 42
Query: 68 ctcaggaagagatcgatgaaccgctgc 94
||||||||||||||||||||||||||
Sbjct: 41 ttcaggaagagatcgatgaaccgctgc 15
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 tggatgcagaggtttatcgatcgattcatgt 41
|||||||||||||||||||| ||||||||||
Sbjct: 1 tggatgcagaggtttatcgaccgattcatgt 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 tcaggaagagatcgatgaaccgctgc 94
||||||| ||||||||||||||||||
Sbjct: 55 tcaggaacagatcgatgaaccgctgc 80
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 11 tggatgcagaggtttatcgatcgattcatgt 41
|||||||||||||||||||| ||||||||||
Sbjct: 85 tggatgcagaggtttatcgaccgattcatgt 55
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 69 tcaggaagagatcgatgaaccgctgc 94
||||||| ||||||||||||||||||
Sbjct: 31 tcaggaacagatcgatgaaccgctgc 6
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||| |||||||||||||||||||||
Sbjct: 63 tcaggaaaagatcgatgaaccgctgcctc 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctggatgcagaggtttatcgatcg 33
||||||||||||||||||||||||
Sbjct: 7 ctggatgcagaggtttatcgatcg 30
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||| |||||||||||||||||||||
Sbjct: 65 tcaggaaaagatcgatgaaccgctgcctc 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctggatgcagaggtttatcgatcg 33
||||||||||||||||||||||||
Sbjct: 9 ctggatgcagaggtttatcgatcg 32
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||| |||||||||||||||||||||
Sbjct: 65 tcaggaaaagatcgatgaaccgctgcctc 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctggatgcagaggtttatcgatcg 33
||||||||||||||||||||||||
Sbjct: 9 ctggatgcagaggtttatcgatcg 32
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||| |||||||||||||||||||||
Sbjct: 63 tcaggaaaagatcgatgaaccgctgcctc 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctggatgcagaggtttatcgatcg 33
||||||||||||||||||||||||
Sbjct: 7 ctggatgcagaggtttatcgatcg 30
>51618_ptc-miR162c:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||| |||||||||||||||||||||
Sbjct: 42 tcaggaaaagatcgatgaaccgctgcctc 14
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcg 33
||||||||||||||||||||||||
Sbjct: 98 ctggatgcagaggtttatcgatcg 75
>51617_ptc-miR162b:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||| |||||||||||||||||||||
Sbjct: 42 tcaggaaaagatcgatgaaccgctgcctc 14
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcg 33
||||||||||||||||||||||||
Sbjct: 98 ctggatgcagaggtttatcgatcg 75
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||||||||||| ||||||
Sbjct: 130 ctggatgcagaggtttatcgaccgattc 103
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||||||||||| ||||||
Sbjct: 99 ctggatgcagaggtttatcgaccgattc 72
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||| ||||||||||||||
Sbjct: 114 ctggatgcagaggcttatcgatcgattc 87
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||| ||||||||||||||
Sbjct: 124 ctggatgcagaggcttatcgatcgattc 97
>48685_lsa-miR162:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 gcgctggatgcagaggtttatcga 30
||||||||||||||||||||||||
Sbjct: 24 gcgctggatgcagaggtttatcga 1
>48546_gma-miR162m:pmrd
Length = 367
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 gcgctggatgcagaggtttatcga 30
||||||||||||||||||||||||
Sbjct: 24 gcgctggatgcagaggtttatcga 1
