miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00701;mir-126;AAVX01058805.1/2145-2073 7868:Callorhinchus milii
(ghost shark)
Length = 73
Score = 77.7 bits (38), Expect = 2e-14
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 14 gcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 66 gcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 9
>RF00701;mir-126;AAFR03005634.1/12031-12103 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 75.6 bits (37), Expect = 9e-14
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 11 ggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataat 69
||||||||||||||||||| | | || ||| |||||||||||||| ||||||||||||||
Sbjct: 69 ggcgcattattactcacggtacgagtttgatgtgtcacagcgcgtaccaaaagtaataat 10
Query: 70 g 70
|
Sbjct: 9 g 9
>RF00701;mir-126;ABRQ01610658.1/2102-2030 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 75.6 bits (37), Expect = 9e-14
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 13 cgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatgt 71
||||||||||||||||| | | || ||| |||||||||||||| |||||||||||||||
Sbjct: 67 cgcattattactcacggtacgagtttgacgtgtcacagcgcgtaccaaaagtaataatgc 8
Query: 72 sccgtcg 78
||||||
Sbjct: 7 cccgtcg 1
>RF00701;mir-126;AAWZ01045019.1/473-401 28377:Anolis carolinensis
(green anole)
Length = 73
Score = 73.6 bits (36), Expect = 4e-13
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || ||||||| |||||||||| |||||||||||||||
Sbjct: 68 gcgcattattactcacggtacgagtttgaagtggcacagcgcgtaccaaaagtaataatg 9
>RF00701;mir-126;AAPN01325297.1/2349-2421 9258:Ornithorhynchus
anatinus (platypus)
Length = 73
Score = 71.6 bits (35), Expect = 1e-12
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 13 cgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
||||||||||||||||| | | || ||||| |||||||||||| |||||||||||||||
Sbjct: 67 cgcattattactcacggtacgagtttgaagcgtcacagcgcgtaccaaaagtaataatg 9
>RF00701;mir-126;AAQR01724391.1/772-699 30611:Otolemur garnettii
(small-eared galago)
Length = 74
Score = 71.6 bits (35), Expect = 1e-12
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 37 tgaagtgtcacagcgcgttccaaaagtaataatgtsccgtc 77
|||||||||||||||||| |||||||||||||||| |||||
Sbjct: 42 tgaagtgtcacagcgcgtaccaaaagtaataatgtcccgtc 2
