miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00952;mir-650;AK129585.1/1-79 9606:Homo sapiens (human)
Length = 79
Score = 83.8 bits (42), Expect = 2e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1 caggaggcagcactctcgggacgtctccaccatggcctgggctctgctcctcct 54
||||||||||| |||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 9 caggaggcagcgctctcgggacgtctccgccatggcctgggctctgctgctcct 62
>RF00952;mir-650;AANU01210640.1/17305-17211 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 77.8 bits (39), Expect = 1e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 16 tcgggacgtctccaccatggcctgggctctgctcctcct 54
|||||||||||||||||||||||||||||||||||||||
Sbjct: 30 tcgggacgtctccaccatggcctgggctctgctcctcct 68
>RF00952;mir-650;AACZ02233323.1/2086-1994 9598:Pan troglodytes
(chimpanzee)
Length = 93
Score = 75.8 bits (38), Expect = 4e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 13 ctctcgggacgtctccaccatggcctgggctctgctcctcct 54
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 26 ctctggggacgtctccaccatggcctgggctctgctcctcct 67
>RF00952;mir-650;AAWR02038310.1/87959-87865 9796:Equus caballus
(horse)
Length = 95
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 13 ctctcgggacgtctccaccatggcctgggctctgctcctcct 54
|||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 27 ctcttggggcgtctccaccatggcctgggctctgctcctcct 68
>RF00952;mir-650;AAPY01440642.1/1292-1385 37347:Tupaia belangeri
(northern tree shrew)
Length = 94
Score = 65.9 bits (33), Expect = 4e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 22 cgtctccaccatggcctgggctctgctcctcct 54
|||||||||||||||||||||||||||||||||
Sbjct: 35 cgtctccaccatggcctgggctctgctcctcct 67
>RF00952;mir-650;AANU01210643.1/9228-9138 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 23 gtctccaccatggcctgggctctgctcctcct 54
||||||||||||||||||||||||||||||||
Sbjct: 33 gtctccaccatggcctgggctctgctcctcct 64
>RF00952;mir-650;AAGW01499587.1/2632-2723 9986:Oryctolagus
cuniculus (rabbit)
Length = 92
Score = 61.9 bits (31), Expect = 7e-10
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 1 caggaggcagcactctcgggacgtctccaccatggcctgggctctgctcctcct 54
||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||
Sbjct: 14 caggaggcagc--tctgggggcgtctgcaccatggcctgggctctgctcctcct 65
>RF00952;mir-650;AAPE01597063.1/4995-4901 59463:Myotis lucifugus
(little brown bat)
Length = 95
Score = 60.0 bits (30), Expect = 3e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 25 ctccaccatggcctgggctctgctcctcct 54
||||||||||||||||||||||||||||||
Sbjct: 39 ctccaccatggcctgggctctgctcctcct 68
>RF00952;mir-650;ABRN01253218.1/12975-13067 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 93
Score = 60.0 bits (30), Expect = 3e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 22 cgtctccaccatggcctgggctctgctcct 51
||||||||||||||||||||||||||||||
Sbjct: 34 cgtctccaccatggcctgggctctgctcct 63
>RF00952;mir-650;ABDC01347843.1/2261-2349 30608:Microcebus murinus
(gray mouse lemur)
Length = 89
Score = 60.0 bits (30), Expect = 3e-09
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 5 aggcagcactctcgggacgtctccaccatggcctgggctctgctcctcct 54
||||||| |||| ||| ||||||||||| |||||||||||||||||||||
Sbjct: 14 aggcagcgctctgggg-cgtctccaccacggcctgggctctgctcctcct 62
>RF00952;mir-650;AAGV020034474.1/1514-1420 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 95
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 26 tccaccatggcctgggctctgctcctcct 54
|||||||||||||||||||||||||||||
Sbjct: 40 tccaccatggcctgggctctgctcctcct 68
>RF00952;mir-650;ABRT010277477.1/4788-4881 9478:Tarsius syrichta
(Philippine tarsier)
Length = 94
Score = 56.0 bits (28), Expect = 4e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1 caggaggcagcactctcgggacgtctccaccatggcctgggctctgct 48
|||||||||||| ||| ||| | ||||||||||| |||||||||||||
Sbjct: 14 caggaggcagcagtcttggggcatctccaccatgacctgggctctgct 61
>RF00952;mir-650;AAFC03006141.1/4400-4308 9913:Bos taurus (cattle)
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 22 cgtctccaccatggcctgggctctgctcctc 52
||||||||||||| |||||||||||||||||
Sbjct: 34 cgtctccaccatgtcctgggctctgctcctc 64
>RF00952;mir-650;ABRT010402342.1/832-923 9478:Tarsius syrichta
(Philippine tarsier)
Length = 92
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcc 50
|||||||||||||||||||||||||||
Sbjct: 35 tctccaccatggcctgggctctgctcc 61
>RF00952;mir-650;ABVD01805881.1/404-310 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 95
Score = 52.0 bits (26), Expect = 6e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 5 aggcagcactctcgggacgtctccaccatggcctgggctctgctcctcct 54
|||||||||| | ||| | ||||||||||||||||| |||| ||||||||
Sbjct: 19 aggcagcacttttggggcatctccaccatggcctggcctctcctcctcct 68
>RF00952;mir-650;AAWR02038310.1/141035-140941 9796:Equus caballus
(horse)
Length = 95
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctc 52
||||||| |||||||||||||||||||||
Sbjct: 38 tctccactatggcctgggctctgctcctc 66
>RF00952;mir-650;AAWR02042338.1/76049-75957 9796:Equus caballus
(horse)
Length = 93
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctc 52
||||||||||||||||||||| |||||||
Sbjct: 37 tctccaccatggcctgggctccgctcctc 65
>RF00952;mir-650;AAFC03006146.1/17191-17099 9913:Bos taurus
(cattle)
Length = 93
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctc 52
|||||||||||| ||||||||||||||||
Sbjct: 36 tctccaccatggtctgggctctgctcctc 64
>RF00952;mir-650;ABRT010222590.1/32-125 9478:Tarsius syrichta
(Philippine tarsier)
Length = 94
Score = 50.1 bits (25), Expect = 2e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 2 aggaggcagcactctcgggacgtctccaccatggcctgggctctgctcctcct 54
|||||||||||| || | | | ||||||||||||| |||||||||| ||||||
Sbjct: 15 aggaggcagcacgcttgaggcatctccaccatggcttgggctctgcccctcct 67
>RF00952;mir-650;AANU01210692.1/6129-6039 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 22 cgtctccaccatggcctgggctctgctcctcct 54
||||||||||||||||||||||| ||||||||
Sbjct: 32 cgtctccaccatggcctgggctccactcctcct 64
>RF00952;mir-650;AACN010976540.1/395-303 9615:Canis lupus
familiaris (dog)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 ccaccatggcctgggctctgctcctcct 54
||||||||||||||||||||||| ||||
Sbjct: 41 ccaccatggcctgggctctgctcatcct 68
>RF00952;mir-650;AAPY01472742.1/638-730 37347:Tupaia belangeri
(northern tree shrew)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 23 gtctccaccatggcctgggctctgctcctcct 54
|||||||||||||||||| ||||| |||||||
Sbjct: 35 gtctccaccatggcctggactctgttcctcct 66
>RF00952;mir-650;ABRT010825472.1/1666-1572 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 23 gtctccaccatggcctgggctctgctcctcct 54
|||||||||| ||||||| |||||||||||||
Sbjct: 37 gtctccaccacggcctggcctctgctcctcct 68
>RF00952;mir-650;AAKN02007211.1/26174-26084 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 9 agcactctcgggacgtctccaccatggcctgggctctgct 48
|||||||| ||| | ||||||||||||||| |||||||||
Sbjct: 19 agcactcttggggcatctccaccatggcctaggctctgct 58
>RF00952;mir-650;ABVD01369722.1/4512-4604 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 93
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 23 gtctccaccatggcctgggctctgctc 49
||||| |||||||||||||||||||||
Sbjct: 36 gtctcaaccatggcctgggctctgctc 62
>RF00952;mir-650;AAWR02038310.1/54887-54794 9796:Equus caballus
(horse)
Length = 94
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctcct 54
|||||||||||||| | ||||||||||||||
Sbjct: 37 tctccaccatggccagtgctctgctcctcct 67
>RF00952;mir-650;AAWR02038310.1/76191-76097 9796:Equus caballus
(horse)
Length = 95
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctcct 54
||||||||||||||| || ||||||||||||
Sbjct: 38 tctccaccatggccttggttctgctcctcct 68
>RF00952;mir-650;AANN01840108.1/4686-4777 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 ccaccatggcctgggctctgctc 49
|||||||||||||||||||||||
Sbjct: 38 ccaccatggcctgggctctgctc 60
>RF00952;mir-650;AANN01778356.1/4698-4791 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctcct 54
|||||||||||||||||| ||||||| ||||
Sbjct: 37 tctccaccatggcctgggttctgctcttcct 67
>RF00952;mir-650;AANN01442391.1/982-1071 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctcct 54
||||||||||||||||||| |||||| ||||
Sbjct: 33 tctccaccatggcctgggccctgctcttcct 63
>RF00952;mir-650;AAFC03006141.1/7448-7356 9913:Bos taurus (cattle)
Length = 93
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 tccaccatggcctgggctctgct 48
|||||||||||||||||||||||
Sbjct: 38 tccaccatggcctgggctctgct 60
>RF00952;mir-650;ACBE01380695.1/14347-14253 9685:Felis catus
(domestic cat)
Length = 95
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 caccatggcctgggctctgctcctcct 54
||||||||||||||||||| |||||||
Sbjct: 42 caccatggcctgggctctggtcctcct 68
>RF00952;mir-650;AACN010127126.1/1088-994 9615:Canis lupus
familiaris (dog)
Length = 95
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctcct 54
||||||||||||||||| ||||| |||||||
Sbjct: 38 tctccaccatggcctggactctggtcctcct 68
>RF00952;mir-650;AANU01210623.1/10437-10347 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 caccatggcctgggctctgctcctcct 54
|||||| ||||||||||||||||||||
Sbjct: 38 caccatagcctgggctctgctcctcct 64
>RF00952;mir-650;ABVD01470222.1/504-413 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 25 ctccaccatggcctgggctctgctcctcct 54
|||||||||||||||||||| ||||||||
Sbjct: 36 ctccaccatggcctgggctcccctcctcct 65
>RF00952;mir-650;AAGV020710538.1/2448-2354 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 95
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 13 ctctcgggacgtctccaccatggcctgggctctgctcctcct 54
|||| ||||| ||||||||||||||||| ||| ||||||||
Sbjct: 27 ctctggggacatctccaccatggcctggactcccctcctcct 68
>RF00952;mir-650;AAQR01447121.1/1441-1530 30611:Otolemur garnettii
(small-eared galago)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 tccaccatggcctgggctctgctcct 51
||||||||||||||||||||| ||||
Sbjct: 35 tccaccatggcctgggctctggtcct 60
>RF00952;mir-650;AAQR01429354.1/638-549 30611:Otolemur garnettii
(small-eared galago)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 25 ctccaccatggcctgggctctgctcctcct 54
|||||||||||||| ||||||| |||||||
Sbjct: 34 ctccaccatggcctaggctctggtcctcct 63
>RF00952;mir-650;ABRT010420629.1/993-902 9478:Tarsius syrichta
(Philippine tarsier)
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 ccaccatggcctgggctctgctcctc 52
||||||||||||||||||| ||||||
Sbjct: 41 ccaccatggcctgggctctactcctc 66
>RF00952;mir-650;ABQO010464055.1/1652-1559 9315:Macropus eugenii
(tammar wallaby)
Length = 94
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctc 44
|||||||||||||||||||||
Sbjct: 37 tctccaccatggcctgggctc 57
>RF00952;mir-650;AAWR02038312.1/165638-165549 9796:Equus caballus
(horse)
Length = 90
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctc 44
|||||||||||||||||||||
Sbjct: 33 tctccaccatggcctgggctc 53
>RF00952;mir-650;AALT01031995.1/1010-1104 42254:Sorex araneus
(European shrew)
Length = 95
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 18 gggacgtctccaccatggcctgggctctg 46
||||||| ||||||||| |||||||||||
Sbjct: 32 gggacgtatccaccatgacctgggctctg 60
>RF00952;mir-650;AAPE01354261.1/1452-1541 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 cgtctccaccatggcctgggc 42
|||||||||||||||||||||
Sbjct: 31 cgtctccaccatggcctgggc 51
>RF00952;mir-650;ABRP01240163.1/9497-9585 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 22 cgtctccaccatggcctgggctctgctcctcct 54
|||||| |||||||||||||||| ||||||||
Sbjct: 30 cgtctctaccatggcctgggctcctctcctcct 62
>RF00952;mir-650;ABRP01298648.1/4616-4709 132908:Pteropus vampyrus
(large flying fox)
Length = 94
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgct 48
|||| ||||||||||||||||||||
Sbjct: 37 tctcgaccatggcctgggctctgct 61
>RF00952;mir-650;AAPY01513208.1/576-668 37347:Tupaia belangeri
(northern tree shrew)
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 22 cgtctccaccatggcctgggctctgctcctcct 54
||||||||||||||||||| |||| |||||||
Sbjct: 34 cgtctccaccatggcctggattctgttcctcct 66
>RF00952;mir-650;ABRT010484678.1/2677-2771 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 24 tctccaccatggcctgggctctgctcctc 52
||||||||||| ||||| |||||||||||
Sbjct: 38 tctccaccatgacctggcctctgctcctc 66
>RF00952;mir-650;ABRT010346061.1/8292-8386 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 atggcctgggctctgctcctc 52
|||||||||||||||||||||
Sbjct: 46 atggcctgggctctgctcctc 66
