miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28850_hsa-mir-548t:mirbase
Length = 74
Score = 56.0 bits (28), Expect = 4e-09
Identities = 49/55 (89%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 22 tggtttttgctatttattttaatgataaaaaccacaattatttttgtaccaacct 76
|||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 22 tggtttttgcaattt--tttaatgacaaaaaccacaattacttttgcaccaacct 74
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 22 tggtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
|||||||||| ||| ||| |||| |||||||||||||| ||||| |||||||||
Sbjct: 29 tggtttttgccattactttcaatggcaaaaaccacaattacttttgcaccaaccta 84
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 22 tggtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
|||||||||| ||| ||| |||| |||||||||||||| ||||| |||||||||
Sbjct: 69 tggtttttgccattactttcaatggcaaaaaccacaattacttttgcaccaaccta 14
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 22 tggtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
|||||||||| ||| ||| |||| |||||||||||||| ||||| |||||||||
Sbjct: 69 tggtttttgccattactttcaatggcaaaaaccacaattacttttgcaccaaccta 14
>28799_hsa-mir-548aa-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 aaaaaccacaattatttttgtaccaaccta 77
|||||||||||||| ||||| |||||||||
Sbjct: 55 aaaaaccacaattacttttgcaccaaccta 84
>28803_hsa-mir-548ad:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 48 aaaaaccacaattatttttgtaccaaccta 77
|||||||||||||| ||||| |||||||||
Sbjct: 34 aaaaaccacaattacttttgcaccaaccta 5
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 24 gtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
|||||||||||| |||||||| ||||||| |||||| |||| |||||||||
Sbjct: 32 gtttttgctattacttttaatggtaaaaactgcaattacttttacaccaaccta 85
>28820_hsa-mir-548d-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 48 aaaaaccacaattatttttgtaccaaccta 77
|||||||||||||| ||||| |||||||||
Sbjct: 43 aaaaaccacaattacttttgcaccaaccta 14
>28821_hsa-mir-548d-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 48 aaaaaccacaattatttttgtaccaaccta 77
|||||||||||||| ||||| |||||||||
Sbjct: 43 aaaaaccacaattacttttgcaccaaccta 14
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 1e-05
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 24 gtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
|||||||||||| ||| ||||| ||||||| | |||| ||||| |||||||||
Sbjct: 71 gtttttgctattactttcaatgacaaaaaccgcgattacttttgcaccaaccta 18
>30470_ptr-mir-548a-1:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 5e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 38 ttttaatgataaaaaccacaattatttttgtaccaac 74
|||||||| |||||||||||||| ||||| ||||||
Sbjct: 52 ttttaatggcaaaaaccacaattacttttgcaccaac 16
>27996_mml-mir-548a:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 48 aaaaaccacaattatttttgtaccaac 74
|||||||||||||| ||||| ||||||
Sbjct: 43 aaaaaccacaattacttttgcaccaac 17
>27999_mml-mir-548d:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 51 aaccacaattatttttgtaccaaccta 77
||||||||||| ||||| |||||||||
Sbjct: 40 aaccacaattacttttgcaccaaccta 14
>28000_mml-mir-548d:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 51 aaccacaattatttttgtaccaaccta 77
||||||||||| ||||| |||||||||
Sbjct: 40 aaccacaattacttttgcaccaaccta 14
>28843_hsa-mir-548m:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 9e-04
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 39 tttaatgataaaaaccacaattatttttgtaccaaccta 77
|||||||| ||||||||||| || |||| |||||||||
Sbjct: 43 tttaatgacaaaaaccacaaatacctttgcaccaaccta 5
