miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;CABD01346604.1/3997-4080 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 48 aaaaaccacaattatttttgtaccaaccta 77
|||||||||||||| |||||||||||||||
Sbjct: 33 aaaaaccacaattacttttgtaccaaccta 4
>RF01061;mir-548;AANU01283759.1/9595-9678 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 24 gtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
|||||||| ||| ||||||||| ||||||||||| | |||||||||||||||
Sbjct: 57 gtttttgccattacttttaatgacaaaaaccacaaatgcttttgtaccaaccta 4
>RF01061;mir-548;AANU01260291.1/17494-17411 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 25 tttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
||||||| ||| |||||||| | |||||||||||||||||| |||||||||
Sbjct: 56 tttttgcaattacttttaatggcagaaaccacaattatttttgcaccaaccta 4
>RF01061;mir-548;AACZ02147953.1/7033-7116 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 18 attatggtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
||||||| |||| ||||| ||| |||| |||||||||||||| ||||| |||||||||
Sbjct: 63 attatggcttttactattactttcaatggcaaaaaccacaattacttttgcaccaaccta 4
>RF01061;mir-548;CABD01007255.1/6013-6096 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 18 attatggtttttgctatttattttaatgataaaaaccacaattatttttgtaccaaccta 77
|||| ||||||||||||| ||||||| |||||||||||||| ||||| |||| ||||
Sbjct: 63 attacggtttttgctattatatttaatggcaaaaaccacaattacttttgcaccagccta 4
>RF01061;mir-548;AANU01199994.1/1877-1794 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 42 aatgataaaaaccacaattatttttgtaccaaccta 77
|||| |||||||||||||||| |||| |||||||||
Sbjct: 39 aatggtaaaaaccacaattatgtttgcaccaaccta 4
>RF01061;mir-548;ABGA01354861.1/8138-8055 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 48 aaaaaccacaattatttttgtaccaaccta 77
|||||||||||||| ||||| |||||||||
Sbjct: 33 aaaaaccacaattacttttgcaccaaccta 4
>RF01061;mir-548;ABSL01062835.1/19063-18980 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 48 aaaaaccacaattatttttgtaccaaccta 77
|||||||||||||| ||||| |||||||||
Sbjct: 33 aaaaaccacaattacttttgcaccaaccta 4
>RF01061;mir-548;AACZ02112099.1/25061-25144 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 aaaaccacaattatttttgtaccaaccta 77
||||||||||||| ||||| |||||||||
Sbjct: 32 aaaaccacaattacttttgcaccaaccta 4
>RF01061;mir-548;CABD01009254.1/6580-6663 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 aaaaccacaattatttttgtaccaaccta 77
||||||||||||| ||||| |||||||||
Sbjct: 32 aaaaccacaattacttttgcaccaaccta 4
>RF01061;mir-548;AANU01290519.1/8633-8716 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 49 aaaaccacaattatttttgtaccaaccta 77
||||||||||||| ||||| |||||||||
Sbjct: 32 aaaaccacaattacttttgcaccaaccta 4
