miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;ABRQ01101197.1/2188-2097 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 99.6 bits (50), Expect = 3e-21
Identities = 59/61 (96%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttgggatccacctt--tctctcgacagcacgacactgcctt 58
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcctgttgttgggatccacctttctctctcgacagcacgacactgcctt 76
Query: 59 c 59
|
Sbjct: 77 c 77
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 69.9 bits (35), Expect = 3e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgcctt 58
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 17 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctt 75
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttgggatcca 29
||||||||||||| |||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggatcca 45
>RF00256;mir-196;AAFR03029824.1/20829-20920 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 ttaggtagtttcctgttgttggg 24
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcctgttgttggg 40
>RF00256;mir-196;AC149508.2/54375-54285 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 91
Score = 46.1 bits (23), Expect = 4e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttggg-atccacctttctctcgacagcacgacactgcctt 58
|||||||||||| |||||||||| || |||||||||||| ||| || || ||||||||
Sbjct: 17 tttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactgcctt 75
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttgggatc 27
||||||||||||| |||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggatc 43
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttgggat 26
||||||||||||| ||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggat 42
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttgggat 26
||||||||||||| ||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggat 42
>RF00256;mir-196;ABRQ01001823.1/1565-1475 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 ttaggtagtttcctgttgttgggat 26
|||||||||||| ||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttgggat 42
>RF00256;mir-196;BAAE01222104.1/303-214 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tttaggtagtttcctgttgttgggatcca 29
||||||||||||| |||||||||| ||||
Sbjct: 17 tttaggtagtttcatgttgttggggtcca 45
