miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41069_ghr-MIR827c:mirbase
Length = 155
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 ttgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattctttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattctttgtt 65
Query: 61 caagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgtttagatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 caagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgtttagatga 125
Query: 121 ccatcaacaaacaacttcctct 142
||||||||||||||||||||||
Sbjct: 126 ccatcaacaaacaacttcctct 147
>41067_ghr-MIR827a:mirbase
Length = 155
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 ttgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattctttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattctttgtt 65
Query: 61 caagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgtttagatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 caagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgtttagatga 125
Query: 121 ccatcaacaaacaacttc 138
||||||||||||||||||
Sbjct: 126 ccatcaacaaacaacttc 143
>41068_ghr-MIR827b:mirbase
Length = 192
Score = 260 bits (131), Expect = 2e-70
Identities = 134/135 (99%)
Strand = Plus / Plus
Query: 4 ttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattctttgttcaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 ttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattctttgttcaa 86
Query: 64 gcagtttttggataatcgaaccgatagactacacccgcagaaatgatgtttagatgacca 123
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 87 gcagtttttggataatcgaaccgatagaatacacccgcagaaatgatgtttagatgacca 146
Query: 124 tcaacaaacaacttc 138
|||||||||||||||
Sbjct: 147 tcaacaaacaacttc 161
>41160_tcc-MIR827:mirbase
Length = 148
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 aatgatgtttagatgaccatcaacaaaca 133
||||||| |||||||||||||||||||||
Sbjct: 100 aatgatgcttagatgaccatcaacaaaca 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 5 tgaatgtgtttgtttatggtcatctaagc 33
|||| ||||||||| ||||||||||||||
Sbjct: 134 tgaaagtgtttgttgatggtcatctaagc 106
>40145_ath-MIR827:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 gtttagatgaccatcaacaaac 132
||||||||||||||||||||||
Sbjct: 104 gtttagatgaccatcaacaaac 125
>39909_aly-MIR827:mirbase
Length = 197
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 gtttagatgaccatcaacaaac 132
||||||||||||||||||||||
Sbjct: 118 gtttagatgaccatcaacaaac 139
>41265_csi-MIR827:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 ttagatgaccatcaacaaaca 133
|||||||||||||||||||||
Sbjct: 61 ttagatgaccatcaacaaaca 81
