miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 331 bits (167), Expect = 1e-91
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 11 tgctttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacct 60
Query: 71 ccccatcatggaaaaagtccgtatttttcccctctggtttttcatggaggtgggcatact 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccccatcatggaaaaagtccgtatttttcccctctggtttttcatggaggtgggcatact 120
Query: 131 gccaactgtgctctgttggcttctctttgtaaaatccttgtgatgca 177
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gccaactgtgctctgttggcttctctttgtaaaatccttgtgatgca 167
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 113 bits (57), Expect = 5e-26
Identities = 112/126 (88%), Gaps = 7/126 (5%)
Strand = Plus / Plus
Query: 33 agggcttcttacagagtttattggcattctgtccacctccccatcatggaaaaagtccgt 92
||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
Sbjct: 1 agggcttcttacagagtttattggcattctgtccacctccc-atcacagaaaa--tccct 57
Query: 93 att-tttcccctctggtttttcatggaggtgggcatactgccaactgtgctctgttggct 151
| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 58 ttcctttcccctctc---tttcatggaggtgggcatactgccaactgggctctgttggct 114
Query: 152 tctctt 157
||||||
Sbjct: 115 tctctt 120
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 89.7 bits (45), Expect = 7e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 16 tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 72
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcc 57
Score = 71.9 bits (36), Expect = 2e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 114 atggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 173
||||||||||||||||||||||| | |||||||||| ||||||||||||| ||| ||||
Sbjct: 88 atggaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaaccctcgtga 147
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 89.7 bits (45), Expect = 7e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 16 tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 72
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcc 57
Score = 71.9 bits (36), Expect = 2e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 114 atggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 173
||||||||||||||||||||||| | |||||||||| ||||||||||||| ||| ||||
Sbjct: 88 atggaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaaccctcgtga 147
>41239_csi-MIR394:mirbase
Length = 147
Score = 83.8 bits (42), Expect = 4e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 112 tcatggaggtgggcatactgccaactgtgctctgttggcttctctt 157
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 102 tcatggaggtgggcatactgccaactgagctctgttggcttctctt 147
Score = 71.9 bits (36), Expect = 2e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 37 cttcttacagagtttattggcattctgtccacctcc 72
||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcttacagagtttattggcattctgtccacctcc 36
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 81.8 bits (41), Expect = 2e-16
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 16 tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 72
||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1 tcatgtgggttttgcaaagggtttcttacagagttttttggcattctgtccacctcc 57
Score = 77.8 bits (39), Expect = 3e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 173
|||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 81.8 bits (41), Expect = 2e-16
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 16 tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 72
||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1 tcatgtgggttttgcaaagggtttcttacagagttttttggcattctgtccacctcc 57
Score = 77.8 bits (39), Expect = 3e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 173
|||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147
>40471_gma-MIR394a:mirbase
Length = 157
Score = 73.8 bits (37), Expect = 4e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 16 tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 72
||||| ||||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct: 2 tcatgagggtttagcaaagtgttgctaacagagtttattggcattctgtccacctcc 58
Score = 67.9 bits (34), Expect = 3e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 114 atggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaa 163
|||||||||||||||||| |||||| |||||||||||| | |||||||||
Sbjct: 97 atggaggtgggcatactgtcaactgagctctgttggctacactttgtaaa 146
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 43 acagagtttattggcattctgtccacctccc 73
|||||||||||||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctccc 31
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaac 136
||||||||||||||||||||||
Sbjct: 61 tggaggtgggcatactgccaac 82
>40472_gma-MIR394b:mirbase
Length = 104
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 43 acagagtttattggcattctgtccacctcc 72
||||||||||||||||||||||||||||||
Sbjct: 3 acagagtttattggcattctgtccacctcc 32
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaactgtgctctgttg 148
||||||||||||||||| |||||| | |||||||
Sbjct: 71 tggaggtgggcatactgtcaactgagttctgttg 104
>41776_bdi-MIR394:mirbase
Length = 200
Score = 52.0 bits (26), Expect = 2e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaa 164
||||||||||||||||||||| | ||| ||| |||||| ||||||||||
Sbjct: 125 tggaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaaa 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72
>39867_aly-MIR394a:mirbase
Length = 220
Score = 46.1 bits (23), Expect = 9e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 14 tttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 72
||||||| |||||| ||||| | |||||||||| | ||||||||||||||||||||
Sbjct: 29 tttcatgagggtttgacaaagagtttcttacagacatctttggcattctgtccacctcc 87
>39868_aly-MIR394b:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 39 tcttacagagtttattggcattctgtccacctcc 72
|||||||||| | ||||||||||||||||||||
Sbjct: 27 tcttacagagatctttggcattctgtccacctcc 60
>42790_zma-MIR394b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctccc 73
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctccc 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaa 135
|||||||||||||||||||||
Sbjct: 83 tggaggtgggcatactgccaa 103
>42789_zma-MIR394a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaa 135
|||||||||||||||||||||
Sbjct: 87 tggaggtgggcatactgccaa 107
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaa 135
|||||||||||||||||||||
Sbjct: 53 tggaggtgggcatactgccaa 73
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcc 21
>42000_osa-MIR394:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 115 tggaggtgggcatactgccaa 135
|||||||||||||||||||||
Sbjct: 76 tggaggtgggcatactgccaa 96
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>40078_ath-MIR394b:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 40 cttacagagtttattggcattctgtccacctcc 72
||||||||| | ||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcc 33
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 ggaggtgggcatactgccaa 135
||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaa 107
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54
>40402_ahy-MIR394:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41
>40077_ath-MIR394a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcc 72
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
