miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29163_hsa-mir-1302-3:mirbase
Length = 138
Score = 188 bits (95), Expect = 6e-49
Identities = 114/119 (95%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcgtagcataaatatttcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 132
>30716_ptr-mir-1302-3:mirbase
Length = 137
Score = 180 bits (91), Expect = 2e-46
Identities = 113/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||| ||||| |||||| ||||||||||||||
Sbjct: 14 tttgaattttaga-taaacaacgaataatttcgtagcataaatatgtcccaagcttagtt 72
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 131
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| |||||||| ||| ||||| |
Sbjct: 91 ttagcataagtatgtcccaaactaagcttgggacatatttatgctacgaaa--ttattcg 34
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 33 ttgtttatctaaaattcaaa 14
>30717_ptr-mir-1302-4:mirbase
Length = 137
Score = 180 bits (91), Expect = 2e-46
Identities = 113/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||| ||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcgtagcataaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| |||||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttatgctacgaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>30718_ptr-mir-1302-5:mirbase
Length = 137
Score = 180 bits (91), Expect = 2e-46
Identities = 113/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcttagcataaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcagaattaagc 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 67/80 (83%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| ||||||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttatgctaagaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>31356_ppy-mir-1302-1:mirbase
Length = 137
Score = 180 bits (91), Expect = 2e-46
Identities = 113/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcttagcctaaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| ||| ||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttaggctaagaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>31357_ppy-mir-1302-2:mirbase
Length = 137
Score = 180 bits (91), Expect = 2e-46
Identities = 113/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcttagcctaaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| ||| ||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttaggctaagaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>30715_ptr-mir-1302-2:mirbase
Length = 137
Score = 178 bits (90), Expect = 6e-46
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 17 ataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtttgggacatactta 76
|||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 27 ataaacaacgaataatttcgtagcataaatatgtcccaagcttagtttgggacatactta 86
Query: 77 tgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgctaaaaaacattattggttgtttatctgagattcaaaattaagc 132
>29160_hsa-mir-1302-10:mirbase
Length = 138
Score = 172 bits (87), Expect = 4e-44
Identities = 112/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||| ||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcgtagcataaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcagaattaagc 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| |||||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttatgctacgaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>29161_hsa-mir-1302-11:mirbase
Length = 138
Score = 172 bits (87), Expect = 4e-44
Identities = 112/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||| ||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcgtagcataaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcagaattaagc 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| |||||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttatgctacgaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>29162_hsa-mir-1302-2:mirbase
Length = 138
Score = 172 bits (87), Expect = 4e-44
Identities = 112/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||| ||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcgtagcataaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcagaattaagc 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| |||||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttatgctacgaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>29169_hsa-mir-1302-9:mirbase
Length = 138
Score = 172 bits (87), Expect = 4e-44
Identities = 112/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 tttgaattttaaaataaacaacgaaaaatttcttagcaaaaatatttcccaagcttagtt 63
||||||||||| | ||||||||||| |||||| ||||| |||||| ||||||||||||||
Sbjct: 15 tttgaattttaga-taaacaacgaataatttcgtagcataaatatgtcccaagcttagtt 73
Query: 64 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagc 122
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 74 tgggacatacttatgctaaaaaacattattggttgtttatctgagattcagaattaagc 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 66/80 (82%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 36 ttagcaaaaatatttcccaagcttagtttgggacatacttatgctaaaaaacattattgg 95
|||||| || ||| |||||| || || |||||||||| |||||||| ||| ||||| |
Sbjct: 92 ttagcataagtatgtcccaaactaagcttgggacatatttatgctacgaaa--ttattcg 35
Query: 96 ttgtttatctgagattcaaa 115
|||||||||| | |||||||
Sbjct: 34 ttgtttatctaaaattcaaa 15
>27303_eca-mir-1302d-4:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaaa 86
|||||||||||||||||||||||||
Sbjct: 57 tttgggacatacttatgctaaaaaa 81
>29166_hsa-mir-1302-6:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaaa 86
|||||||||||||||||||||||||
Sbjct: 55 tttgggacatacttatgctaaaaaa 79
>29168_hsa-mir-1302-8:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaaa 86
|||||||||||||||||||||||||
Sbjct: 65 tttgggacatacttatgctaaaaaa 89
>30719_ptr-mir-1302-6:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaaa 86
|||||||||||||||||||||||||
Sbjct: 55 tttgggacatacttatgctaaaaaa 79
>30721_ptr-mir-1302-8:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaaa 86
|||||||||||||||||||||||||
Sbjct: 65 tttgggacatacttatgctaaaaaa 89
>31358_ppy-mir-1302-3:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaaa 86
|||||||||||||||||||||||||
Sbjct: 55 tttgggacatacttatgctaaaaaa 79
>31360_ppy-mir-1302-5:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaaa 86
|||||||||||||||||||||||||
Sbjct: 65 tttgggacatacttatgctaaaaaa 89
>29159_hsa-mir-1302-1:mirbase
Length = 143
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaa 85
||||||||||||||||||||||||
Sbjct: 74 tttgggacatacttatgctaaaaa 97
>29167_hsa-mir-1302-7:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ttgggacatacttatgctaaaaaa 86
||||||||||||||||||||||||
Sbjct: 39 ttgggacatacttatgctaaaaaa 62
>30714_ptr-mir-1302-1:mirbase
Length = 142
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaaa 85
||||||||||||||||||||||||
Sbjct: 74 tttgggacatacttatgctaaaaa 97
>30720_ptr-mir-1302-7:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ttgggacatacttatgctaaaaaa 86
||||||||||||||||||||||||
Sbjct: 39 ttgggacatacttatgctaaaaaa 62
>31359_ppy-mir-1302-4:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ttgggacatacttatgctaaaaaa 86
||||||||||||||||||||||||
Sbjct: 40 ttgggacatacttatgctaaaaaa 63
>29164_hsa-mir-1302-4:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaa 84
|||||||||||||||||||||||
Sbjct: 76 tttgggacatacttatgctaaaa 98
>29165_hsa-mir-1302-5:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgggacatacttatgctaaaa 84
|||||||||||||||||||||||
Sbjct: 76 tttgggacatacttatgctaaaa 98
