miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28407_hsa-mir-92b:mirbase
Length = 96
Score = 159 bits (80), Expect = 5e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 3 cgggccccgggcgggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaa 62
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaa 60
Query: 63 tattgcactcgtcccggcctccgg 86
||||||||||||||||||||||||
Sbjct: 61 tattgcactcgtcccggcctccgg 84
>30797_ppy-mir-92b:mirbase
Length = 96
Score = 159 bits (80), Expect = 5e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 3 cgggccccgggcgggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaa 62
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaa 60
Query: 63 tattgcactcgtcccggcctccgg 86
||||||||||||||||||||||||
Sbjct: 61 tattgcactcgtcccggcctccgg 84
>27697_mml-mir-92b:mirbase
Length = 96
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 3 cgggccccgggcgggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaa 62
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaa 60
Query: 63 tattgcactcgtcccggcctccgg 86
||||||||||||||||||||||||
Sbjct: 61 tattgcactcgtcccggcctccgg 84
>33180_bta-mir-92b:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 3 cgggccccgggcgggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaa 62
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||
Sbjct: 1 cgggccccgggcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaa 60
Query: 63 tattgcactcgtcccggcctccgg 86
||||||||||||||||||||||||
Sbjct: 61 tattgcactcgtcccggcctccgg 84
>26990_eca-mir-92b:mirbase
Length = 75
Score = 127 bits (64), Expect = 2e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 15 gggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaatattgcactcgt 74
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaatattgcactcgt 60
Query: 75 cccggcctccgg 86
||||||||||||
Sbjct: 61 cccggcctccgg 72
>33952_ssc-mir-92b:mirbase
Length = 80
Score = 123 bits (62), Expect = 3e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 13 gcgggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaatattgcactc 72
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
Query: 73 gtcccggcctccgg 86
||||||||||||||
Sbjct: 61 gtcccggcctccgg 74
>33953_ssc-mir-92b:mirbase
Length = 80
Score = 123 bits (62), Expect = 3e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 13 gcgggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaatattgcactc 72
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct: 1 gcgggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactc 60
Query: 73 gtcccggcctccgg 86
||||||||||||||
Sbjct: 61 gtcccggcctccgg 74
>31821_mmu-mir-92b:mirbase
Length = 83
Score = 111 bits (56), Expect = 1e-25
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 15 gggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaatattgcactcgt 74
||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct: 4 gggcgggagggacgggacgtggtgcagtgttgttctttcccctgccaatattgcactcgt 63
Query: 75 cccggcctccgg 86
||||||||||||
Sbjct: 64 cccggcctccgg 75
>32702_rno-mir-92b:mirbase
Length = 83
Score = 111 bits (56), Expect = 1e-25
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 15 gggcgggagggacgggacgctgtgcagtgttgttttttcccccgccaatattgcactcgt 74
|||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
Query: 75 cccggcctccgg 86
||||||||||||
Sbjct: 64 cccggcctccgg 75
>26668_cfa-mir-92b:mirbase
Length = 63
Score = 101 bits (51), Expect = 1e-22
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 22 agggacgggacgctgtgcagtgttgttttttcccccgccaatattgcactcgtcccggcc 81
||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 agggacgggacgcggtgcagtgttgttctctcccccgccaatattgcactcgtcccggcc 60
Query: 82 tcc 84
|||
Sbjct: 61 tcc 63
>34258_dre-mir-92b:mirbase
Length = 82
Score = 67.9 bits (34), Expect = 1e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 35 tgtgcagtgttgttttttcccccgccaatattgcactcgtcccggcctcc 84
|||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 28 tgtgcagtgttgttcaatctcccgccaatattgcactcgtcccggcctcc 77
>25749_xtr-mir-92b:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 3e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 35 tgtgcagtgttgttttttcccccgccaatattgcactcgtcccggcctcc 84
|||||| |||||| |||| || |||||||||||||||||||||||||||
Sbjct: 20 tgtgcactgttgtcctttctcctgccaatattgcactcgtcccggcctcc 69
>34875_sko-mir-92c:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 aatattgcactcgtcccggcct 82
||||||||||||||||||||||
Sbjct: 59 aatattgcactcgtcccggcct 80
>34949_xbo-mir-92a:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 aatattgcactcgtcccggcct 82
||||||||||||||||||||||
Sbjct: 48 aatattgcactcgtcccggcct 69
>34820_spu-mir-92c:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 atattgcactcgtcccggcct 82
|||||||||||||||||||||
Sbjct: 60 atattgcactcgtcccggcct 80
>38110_bma-mir-92:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 atattgcactcgtcccggcct 82
|||||||||||||||||||||
Sbjct: 66 atattgcactcgtcccggcct 86
>25350_odi-mir-92a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 tattgcactcgtcccggcct 82
||||||||||||||||||||
Sbjct: 66 tattgcactcgtcccggcct 85
>25466_pma-mir-92a:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 tattgcactcgtcccggcct 82
||||||||||||||||||||
Sbjct: 49 tattgcactcgtcccggcct 68