miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 1 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 20
Query: 61 gcaggaacaggagtcga 77
|||||||||||||||||
Sbjct: 19 gcaggaacaggagtcga 3
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 1 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 20
Query: 61 gcaggaacaggagtcga 77
|||||||||||||||||
Sbjct: 19 gcaggaacaggagtcga 3
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 63
Query: 61 gcaggaacaggagtcga 77
|||||||||||||||||
Sbjct: 64 gcaggaacaggagtcga 80
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 1 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 ccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttca 22
Query: 61 gcaggaacaggagtcga 77
|||||||||||||||||
Sbjct: 21 gcaggaacaggagtcga 5
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 1 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 ccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttca 22
Query: 61 gcaggaacaggagtcga 77
|||||||||||||||||
Sbjct: 21 gcaggaacaggagtcga 5
>33024_rno-mir-3074:mirbase
Length = 117
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 1 ccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 94 ccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttca 35
Query: 61 gcaggaacaggagtcga 77
|||||||||||||||||
Sbjct: 34 gcaggaacaggagtcga 18
>26413_tgu-mir-24:mirbase
Length = 132
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 5 cctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcag 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 57 cctccggtgcctactgagctgatatcagttctgattttacacactggctcagttcagcag 116
Query: 65 gaacaggagtcga 77
|||||||||||||
Sbjct: 117 gaacaggagtcga 129
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 7 tccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 60
Query: 67 acaggag 73
|||||||
Sbjct: 61 acaggag 67
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>25908_gga-mir-24:mirbase
Length = 68
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 10 ggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaaca 69
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgatatcagttctcattgtacacactggctcagttcagcaggaaca 60
Query: 70 gg 71
||
Sbjct: 61 gg 62
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 97.6 bits (49), Expect = 1e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 10 ggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 66
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgataacagttctgattttacacactggctcagttcagcagga 57
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 11 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 70
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 71 gag 73
|||
Sbjct: 65 gag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 11 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 70
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 71 gag 73
|||
Sbjct: 65 gag 67
>31442_oan-mir-24:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 4 ccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagca 63
|||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 8 ccctccagtgcctactgagctgatatcagttctc-gttgacccactggctcagttcagca 66
Query: 64 ggaacaggagt 74
|||||||||||
Sbjct: 67 ggaacaggagt 77
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 acactggctcagttcagcaggaacaggagtc 75
|||||||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacaggagtc 106
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggagtc 75
||||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtc 87
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 46 cactggctcagttcagcaggaacaggagtc 75
||||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtc 7
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 46 cactggctcagttcagcaggaacaggagtc 75
||||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtc 7
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggagtc 75
||||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtc 87
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 6 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
Query: 66 aacaggagt 74
|||||||||
Sbjct: 66 aacaggagt 74
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggagtc 75
||||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggagtc 70
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggagtc 75
|||||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggagtc 72
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 44 cacactggctcagttcagcaggaacagga 72
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 44 cacactggctcagttcagcaggaacagga 72
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 cacactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagg 72
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggagt 74
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggagt 74
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggag 73
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>28270_ggo-mir-24:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 acactggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 acactggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 acactggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 acactggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 acactggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>25444_pma-mir-24:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggagtc 75
||||||||||||||||||||||||| ||||
Sbjct: 55 cactggctcagttcagcaggaacagaagtc 84
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcaggaacagg 71
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcaggaacagg 71
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcaggaacagg 71
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcagga 66
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcagga 66
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
