miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28968_hsa-mir-650:mirbase
Length = 96
Score = 135 bits (68), Expect = 6e-33
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 14 ggggtctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctc 73
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 8 ggggtctcaggaggcagcgctctcagga-cgtcaccaccatggcctgggctctgctcctc 66
Query: 74 ctcaccctcctcactcaggg 93
||||||||||||||||||||
Sbjct: 67 ctcaccctcctcactcaggg 86
>30571_ptr-mir-650:mirbase
Length = 95
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 14 ggggtctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctc 73
||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct: 7 ggggtcttaggaggcagcgctctcagga-cgtcaccaccatggccagggctctgctcctc 65
Query: 74 ctcaccctcctcactcaggg 93
||||||||||||||||||||
Sbjct: 66 ctcaccctcctcactcaggg 85
>28078_mml-mir-650a-1:mirbase
Length = 95
Score = 111 bits (56), Expect = 9e-26
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctcctca 77
|||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||
Sbjct: 12 tctcaggaggcagcgctctcagga-cgtctccaccatggtctgggctctgctcctcctca 70
Query: 78 ccctcctcactcaggg 93
||||||||||||||||
Sbjct: 71 ccctcctcactcaggg 86
>28079_mml-mir-650a-2:mirbase
Length = 95
Score = 103 bits (52), Expect = 2e-23
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctcctca 77
|||||||||||||||||||||||| | || ||||||||| ||| ||||||||||||||||
Sbjct: 12 tctcaggaggcagcgctctcagga-cttctccaccatggtctgggctctgctcctcctca 70
Query: 78 ccctcctcactcaggg 93
||||||||||||||||
Sbjct: 71 ccctcctcactcaggg 86
>31220_ppy-mir-650:mirbase
Length = 95
Score = 103 bits (52), Expect = 2e-23
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 14 ggggtctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctc 73
|||||||||||||||||| ||||| ||| |||| ||||||||||||| |||||||||||
Sbjct: 8 ggggtctcaggaggcagctctctcggga-cgtctccaccatggcctggtctctgctcctc 66
Query: 74 ctcaccctcctcactcaggg 93
||||||||||||||||||||
Sbjct: 67 ctcaccctcctcactcaggg 86
>28080_mml-mir-650b:mirbase
Length = 95
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 14 ggggtctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctc 73
|||||||||||||||||||||||| ||| | || ||||||||||||| | ||||||||||
Sbjct: 8 ggggtctcaggaggcagcgctctcggga-catctccaccatggcctgggatctgctcctc 66
Query: 74 ctcaccctcctcactcaggg 93
|||||||||||||||||||
Sbjct: 67 ttcaccctcctcactcaggg 86
>28081_mml-mir-650c:mirbase
Length = 91
Score = 81.8 bits (41), Expect = 8e-17
Identities = 68/77 (88%), Gaps = 5/77 (6%)
Strand = Plus / Plus
Query: 14 ggggtctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctc 73
||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct: 8 ggggtgtcaggaggcagcgctctcag-----tctccaccatggcctgggctctgctcctc 62
Query: 74 ctcaccctcctcactca 90
||||| |||||||||||
Sbjct: 63 ctcactctcctcactca 79
>28082_mml-mir-650d:mirbase
Length = 92
Score = 81.8 bits (41), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 14 ggggtctcaggaggcagcgctctcaggatcgtcaccaccatggcctgagctctgctcctc 73
||||||||||||| ||| ||| || ||| |||| ||||||||||||| ||||||||||||
Sbjct: 8 ggggtctcaggagacagtgctgtcggga-cgtctccaccatggcctgggctctgctcctc 66
Query: 74 ctcaccctcctcactca 90
|||||||| ||||||||
Sbjct: 67 ctcacccttctcactca 83
