miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28078_mml-mir-650a-1:mirbase
Length = 95
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcac 77
|||||||||||||||||||| ||||||||||||||||| |||||| | ||| ||||||||
Sbjct: 12 tctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcctcctcac 71
Query: 78 cctcctcactcagggca 94
|||||||||||||||||
Sbjct: 72 cctcctcactcagggca 88
>28968_hsa-mir-650:mirbase
Length = 96
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcac 77
|||||||||||||||||||| ||||||| |||||||||||||||| | ||| ||||||||
Sbjct: 12 tctcaggaggcagcgctctcaggacgtcaccaccatggcctgggctctgctcctcctcac 71
Query: 78 cctcctcactcagggca 94
|||||||||||||||||
Sbjct: 72 cctcctcactcagggca 88
>31220_ppy-mir-650:mirbase
Length = 95
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcac 77
|||||||||||||| |||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 12 tctcaggaggcagctctctcgggacgtctccaccatggcctggtctctgctcctcctcac 71
Query: 78 cctcctcactcagggca 94
|||||||||||||||||
Sbjct: 72 cctcctcactcagggca 88
>28079_mml-mir-650a-2:mirbase
Length = 95
Score = 105 bits (53), Expect = 6e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcac 77
|||||||||||||||||||| |||| |||||||||||| |||||| | ||| ||||||||
Sbjct: 12 tctcaggaggcagcgctctcaggacttctccaccatggtctgggctctgctcctcctcac 71
Query: 78 cctcctcactcagggca 94
|||||||||||||||||
Sbjct: 72 cctcctcactcagggca 88
>28080_mml-mir-650b:mirbase
Length = 95
Score = 105 bits (53), Expect = 6e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcac 77
||||||||||||||||||||||||| |||||||||||||||||| | ||| ||| ||||
Sbjct: 12 tctcaggaggcagcgctctcgggacatctccaccatggcctgggatctgctcctcttcac 71
Query: 78 cctcctcactcagggca 94
|||||||||||||||||
Sbjct: 72 cctcctcactcagggca 88
>30571_ptr-mir-650:mirbase
Length = 95
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 22 aggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcaccctc 81
|||||||||||||||| ||||||| ||||||||||| |||| | ||| ||||||||||||
Sbjct: 15 aggaggcagcgctctcaggacgtcaccaccatggccagggctctgctcctcctcaccctc 74
Query: 82 ctcactcagggca 94
|||||||||||||
Sbjct: 75 ctcactcagggca 87
>28082_mml-mir-650d:mirbase
Length = 92
Score = 89.7 bits (45), Expect = 3e-19
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 18 tctcaggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcac 77
||||||||| ||| ||| ||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 12 tctcaggagacagtgctgtcgggacgtctccaccatggcctgggctctgctcctcctcac 71
Query: 78 cctcctcactcagggca 94
||| |||||||| ||||
Sbjct: 72 ccttctcactcaaggca 88
>28081_mml-mir-650c:mirbase
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/75 (86%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 20 tcaggaggcagcgctctcgggacgtctccaccatggcctgggcgcggctgctcctcaccc 79
|||||||||||||||||| |||||||||||||||||||| | ||| |||||||| |
Sbjct: 14 tcaggaggcagcgctctc----agtctccaccatggcctgggctctgctcctcctcactc 69
Query: 80 tcctcactcagggca 94
|||||||||| ||||
Sbjct: 70 tcctcactcatggca 84
