miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28918_hsa-mir-603:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgcagtatgtgcca 42
||||||||||| ||||||||||||||||| |||||||
Sbjct: 94 tattaagttggagcaaaagtaattgcagtgtgtgcca 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttggtgcaaaagtaattgcagt 34
||||||||||||||||||||||
Sbjct: 17 ttggtgcaaaagtaattgcagt 38
>31182_ppy-mir-603:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgcagtatgtgcca 42
||||||||||| ||||||||||||||||| |||||||
Sbjct: 94 tattaagttggagcaaaagtaattgcagtgtgtgcca 58
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 catctattaagttggtgcaaaagtaattgc 31
||||||||| ||||||||||||||||||||
Sbjct: 7 catctattaggttggtgcaaaagtaattgc 36
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattg 30
|||||||||||||||||||||||||
Sbjct: 94 tattaagttggtgcaaaagtaattg 70
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 catctattaagttggtgcaaaagtaattgc 31
||||||||| ||||||||||||||||||||
Sbjct: 7 catctattaggttggtgcaaaagtaattgc 36
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattg 30
|||||||||||||||||||||||||
Sbjct: 94 tattaagttggtgcaaaagtaattg 70
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 2 catctattaagttggtgcaaaagtaattgc 31
||||||||| ||||||||||||||||||||
Sbjct: 91 catctattaggttggtgcaaaagtaattgc 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
|||||||||||||||||||||||||
Sbjct: 4 tattaagttggtgcaaaagtaattg 28
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 catctattaagttggtgcaaaagtaattgc 31
||||||||| ||||||||||||||||||||
Sbjct: 7 catctattaggttggtgcaaaagtaattgc 36
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattg 30
|||||||||||||||||||||||||
Sbjct: 94 tattaagttggtgcaaaagtaattg 70
>27996_mml-mir-548a:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
|||||||||||||||||||||||||
Sbjct: 11 tattaagttggtgcaaaagtaattg 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 43 aaaaaccacaattacttttg 24
>28795_hsa-mir-548a-1:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
|||||||||||||||||||||||||
Sbjct: 11 tattaagttggtgcaaaagtaattg 35
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattgcagt 34
||||| |||||||||||||||||||||||
Sbjct: 5 tattaggttggtgcaaaagtaattgcagt 33
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgcagt 34
||||| ||||||| |||||||||||||||
Sbjct: 88 tattaggttggtgtaaaagtaattgcagt 60
>30470_ptr-mir-548a-1:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
|||||||||||||||||||||||||
Sbjct: 10 tattaagttggtgcaaaagtaattg 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 42 aaaaaccacaattacttttg 23
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 gttggtgcaaaagtaattgcagt 34
|||||||||||||||||||||||
Sbjct: 92 gttggtgcaaaagtaattgcagt 70
>28836_hsa-mir-548i-1:mirbase
Length = 149
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaattgc 31
|||||| ||||||||||||||||||||
Sbjct: 24 ctattaggttggtgcaaaagtaattgc 50
>30477_ptr-mir-548i-1:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaattgc 31
|||||| ||||||||||||||||||||
Sbjct: 24 ctattaggttggtgcaaaagtaattgc 50
>30478_ptr-mir-548i-2:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaattgc 31
|||||| ||||||||||||||||||||
Sbjct: 24 ctattaggttggtgcaaaagtaattgc 50
>30480_ptr-mir-548i-4:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaattgc 31
|||||| ||||||||||||||||||||
Sbjct: 24 ctattaggttggtgcaaaagtaattgc 50
>30481_ptr-mir-548i-5:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaattgc 31
|||||| ||||||||||||||||||||
Sbjct: 23 ctattaggttggtgcaaaagtaattgc 49
>30482_ptr-mir-548i-6:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaattgc 31
|||||| ||||||||||||||||||||
Sbjct: 23 ctattaggttggtgcaaaagtaattgc 49
>28797_hsa-mir-548a-3:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgc 31
||||| ||||||||||||||||||||
Sbjct: 94 tattacgttggtgcaaaagtaattgc 69
>28798_hsa-mir-548a-3:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgc 31
||||| ||||||||||||||||||||
Sbjct: 94 tattacgttggtgcaaaagtaattgc 69
>28799_hsa-mir-548aa-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 63 aaaaaccacaattacttttggcaccagcctaata 96
||||||||||||||||||| |||||| |||||||
Sbjct: 55 aaaaaccacaattactttt-gcaccaacctaata 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattg 30
||||| |||||||||||||||||||
Sbjct: 87 tattaggttggtgcaaaagtaattg 63
>28820_hsa-mir-548d-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttggcaccagcctaata 96
||||||||||||||||||| |||||| |||||||
Sbjct: 43 aaaaaccacaattactttt-gcaccaacctaata 11
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
||||| |||||||||||||||||||
Sbjct: 11 tattaggttggtgcaaaagtaattg 35
>28821_hsa-mir-548d-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttggcaccagcctaata 96
||||||||||||||||||| |||||| |||||||
Sbjct: 43 aaaaaccacaattactttt-gcaccaacctaata 11
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
||||| |||||||||||||||||||
Sbjct: 11 tattaggttggtgcaaaagtaattg 35
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgc 31
||||| ||||||||||||||||||||
Sbjct: 104 tattaggttggtgcaaaagtaattgc 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaat 28
|||||| |||||||||||||||||
Sbjct: 2 ctattaggttggtgcaaaagtaat 25
>30474_ptr-mir-548f-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 ctattaagttggtgcaaaagtaattgcagt 34
|||||| |||||||||||||||||| ||||
Sbjct: 81 ctattaggttggtgcaaaagtaattacagt 52
>27999_mml-mir-548d:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
||||| |||||||||||||||||||
Sbjct: 11 tattaggttggtgcaaaagtaattg 35
>28000_mml-mir-548d:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattg 30
||||| |||||||||||||||||||
Sbjct: 11 tattaggttggtgcaaaagtaattg 35
>28019_mml-mir-570:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattgcagt 34
||||| ||||||||||| |||||||||||
Sbjct: 1 tattaggttggtgcaaacgtaattgcagt 29
>28047_mml-mir-603:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgcagtatgtgcca 42
||||||||| | | ||||||||||||||| |||||||
Sbjct: 94 tattaagttagagaaaaagtaattgcagtgtgtgcca 58
>28809_hsa-mir-548ai:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 tattaagttggtgcaaaagtaattgcagt 34
||||| ||||||||||| |||||||||||
Sbjct: 2 tattaggttggtgcaaaggtaattgcagt 30
>28814_hsa-mir-548am:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 agttggtgcaaaagtaattgc 31
|||||||||||||||||||||
Sbjct: 1 agttggtgcaaaagtaattgc 21
>28826_hsa-mir-548f-2:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgcagt 34
||||| |||||||||||||||||| ||||
Sbjct: 91 tattaggttggtgcaaaagtaattacagt 63
>28827_hsa-mir-548f-3:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgcagt 34
||||| |||||||||||||||||| ||||
Sbjct: 86 tattaggttggtgcaaaagtaattacagt 58
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattg 30
||||| |||||||||||||||||||
Sbjct: 85 tattaggttggtgcaaaagtaattg 61
>30475_ptr-mir-548f-2:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 6 tattaagttggtgcaaaagtaattgcagt 34
||||| |||||||||||||||||| ||||
Sbjct: 86 tattaggttggtgcaaaagtaattacagt 58
>28001_mml-mir-548e:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gttggtgcaaaagtaattgc 31
||||||||||||||||||||
Sbjct: 17 gttggtgcaaaagtaattgc 36
>28002_mml-mir-548f:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gttggtgcaaaagtaattgc 31
||||||||||||||||||||
Sbjct: 7 gttggtgcaaaagtaattgc 26
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 55 aaaaaccacaattacttttg 74
>28803_hsa-mir-548ad:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 34 aaaaaccacaattacttttg 15
>28805_hsa-mir-548ae-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 24 aaaaaccacaattacttttg 5
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 43 aaaaaccacaattacttttg 24
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 43 aaaaaccacaattacttttg 24
>28839_hsa-mir-548i-4:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gttggtgcaaaagtaattgc 31
||||||||||||||||||||
Sbjct: 3 gttggtgcaaaagtaattgc 22
>28844_hsa-mir-548n:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 gttggtgcaaaagtaattgc 31
||||||||||||||||||||
Sbjct: 71 gttggtgcaaaagtaattgc 52
>28850_hsa-mir-548t:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 aaaaaccacaattacttttg 82
||||||||||||||||||||
Sbjct: 46 aaaaaccacaattacttttg 65
>28851_hsa-mir-548u:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 7 attaagttggtgcaaaagtaattgcagt 34
|||| ||||| |||||||||||||||||
Sbjct: 81 attaggttggcgcaaaagtaattgcagt 54
>28856_hsa-mir-548y:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 ctattaagttggtgcaaaagtaat 28
|||||| |||||||||||||||||
Sbjct: 8 ctattaggttggtgcaaaagtaat 31
>30479_ptr-mir-548i-3:mirbase
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gttggtgcaaaagtaattgc 31
||||||||||||||||||||
Sbjct: 30 gttggtgcaaaagtaattgc 49
