miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28434_hsa-mir-126:mirbase
Length = 85
Score = 148 bits (74), Expect = 5e-37
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 tggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgag 63
Query: 61 tyataatgcgccgtccac 78
| ||||||||||||||||
Sbjct: 64 taataatgcgccgtccac 81
>30212_ptr-mir-126:mirbase
Length = 84
Score = 148 bits (74), Expect = 5e-37
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 tggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgag 62
Query: 61 tyataatgcgccgtccac 78
| ||||||||||||||||
Sbjct: 63 taataatgcgccgtccac 80
>30821_ppy-mir-126:mirbase
Length = 81
Score = 148 bits (74), Expect = 5e-37
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 tggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgag 63
Query: 61 tyataatgcgccgtccac 78
| ||||||||||||||||
Sbjct: 64 taataatgcgccgtccac 81
>27013_eca-mir-126:mirbase
Length = 73
Score = 136 bits (68), Expect = 2e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 4 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtya 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 64 taatgcgccgtc 75
||||||||||||
Sbjct: 61 taatgcgccgtc 72
>27014_eca-mir-126:mirbase
Length = 73
Score = 136 bits (68), Expect = 2e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 4 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtya 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 64 taatgcgccgtc 75
||||||||||||
Sbjct: 61 taatgcgccgtc 72
>33973_ssc-mir-126:mirbase
Length = 73
Score = 128 bits (64), Expect = 6e-31
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 4 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtya 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 64 taatgcgc 71
||||||||
Sbjct: 61 taatgcgc 68
>27721_mml-mir-126:mirbase
Length = 85
Score = 126 bits (63), Expect = 2e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 8 gggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataat 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11 gggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataat 70
Query: 68 gcgccgtccac 78
|||| ||||||
Sbjct: 71 gcgctgtccac 81
>33204_bta-mir-126:mirbase
Length = 73
Score = 126 bits (63), Expect = 2e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 5 gacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2 gacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaat 61
Query: 65 aatgcgc 71
|||||||
Sbjct: 62 aatgcgc 68
>31847_mmu-mir-126:mirbase
Length = 73
Score = 114 bits (57), Expect = 9e-27
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 11 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcg 70
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
Query: 71 c 71
|
Sbjct: 68 c 68
>31848_mmu-mir-126:mirbase
Length = 73
Score = 114 bits (57), Expect = 9e-27
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 11 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcg 70
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
Query: 71 c 71
|
Sbjct: 68 c 68
>25944_gga-mir-126:mirbase
Length = 84
Score = 112 bits (56), Expect = 4e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcgc 71
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
>26455_tgu-mir-126:mirbase
Length = 132
Score = 112 bits (56), Expect = 4e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcgc 71
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 123
>32725_rno-mir-126:mirbase
Length = 73
Score = 112 bits (56), Expect = 4e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 11 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcg 70
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>33060_rno-mir-3567:mirbase
Length = 118
Score = 112 bits (56), Expect = 4e-26
Identities = 59/60 (98%)
Strand = Plus / Minus
Query: 11 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcg 70
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 87 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 28
>26692_cfa-mir-126:mirbase
Length = 59
Score = 110 bits (55), Expect = 1e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcg 70
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 59
>27377_mdo-mir-126:mirbase
Length = 69
Score = 106 bits (53), Expect = 2e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcgc 71
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 5 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcgc 64
Query: 72 c 72
|
Sbjct: 65 c 65
>31481_oan-mir-126:mirbase
Length = 110
Score = 102 bits (51), Expect = 4e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcg 70
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 29 cattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatgcg 87
>25767_xtr-mir-126:mirbase
Length = 69
Score = 96.5 bits (48), Expect = 2e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgcgc 71
|||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct: 8 cattattacttttggtacgcgctgtgtcacatcaaactcgtaccgtgagtaataatgcgc 67
>34590_fru-mir-126:mirbase
Length = 63
Score = 68.5 bits (34), Expect = 7e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgc 69
||||||||||||||||||||||| || |||| |||||||||||||||| |||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34737_tni-mir-126:mirbase
Length = 63
Score = 68.5 bits (34), Expect = 7e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtyataatgc 69
||||||||||||||||||||||| || |||| |||||||||||||||| |||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34284_dre-mir-126b:mirbase
Length = 103
Score = 60.5 bits (30), Expect = 2e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagt 61
||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct: 23 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagt 72
>34283_dre-mir-126a:mirbase
Length = 101
Score = 54.5 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 12 cattattacttttggtacgcgctgtgaca-cttcaaactcgtaccgtgagtyataatgc 69
||||||||||||||||||||||| | || ||||||||||||||||||| |||||||
Sbjct: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
