miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00694;mir-137;AADN02012896.1/32588-32489 9031:Gallus gallus
(chicken)
Length = 100
Score = 178 bits (90), Expect = 9e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 5 tctgactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tctgactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgc 64
Query: 65 ttaagaatacgcgtagtcgaggagagtacc 94
||||||||||||||||||||||||||||||
Sbjct: 65 ttaagaatacgcgtagtcgaggagagtacc 94
>RF00694;mir-137;BAAE01237923.1/971-872 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 151 bits (76), Expect = 2e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 8 gactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgctta 67
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 gactctcttcggtgacgggtattcttgggtggataatacggatcacgttgttattgctta 67
Query: 68 agaatacgcgtagtcgaggagagt 91
|||||||||||||| |||||||||
Sbjct: 68 agaatacgcgtagttgaggagagt 91
>RF00694;mir-137;ABRO01064648.1/7203-7302 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 149 bits (75), Expect = 8e-36
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 8 gactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgctta 67
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8 gactctattcggtgacgggtattcttgggtggataatacggattacgttgttatagctta 67
Query: 68 agaatacgcgtagtcgaggagagtaccagcg 98
|||||||| ||||||||||||||| ||||||
Sbjct: 68 agaatacgtgtagtcgaggagagtgccagcg 98
>RF00694;mir-137;AL929343.7/129004-128905 7955:Danio rerio
(zebrafish)
Length = 100
Score = 143 bits (72), Expect = 5e-34
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 8 gactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgctta 67
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 8 gactctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgctta 67
Query: 68 agaatacgcgtagtcgaggagagt 91
||||||||||||||||||||||||
Sbjct: 68 agaatacgcgtagtcgaggagagt 91
>RF00694;mir-137;CAAK05033301.1/18518-18419 7955:Danio rerio
(zebrafish)
Length = 100
Score = 131 bits (66), Expect = 2e-30
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 10 ctctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgcttaag 69
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 10 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69
Query: 70 aatacgcgtagtcgaggagagt 91
|||||||||||| |||||||||
Sbjct: 70 aatacgcgtagttgaggagagt 91
>RF00694;mir-137;AJ324266.1/117-18 9606:Homo sapiens (human)
Length = 100
Score = 105 bits (53), Expect = 1e-22
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 1 gtcctctgactctcttcggtgacgggtattcttgggtggataatacggattacgttgtta 60
||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 gtcctctgactctagtcggtgacgggtattcttgggtggataatccggatgacgttgtta 60
Query: 61 ttgcttaagaatacgcgtagtcgaggagagtac 93
| | ||||||||||| ||| || |||| |||||
Sbjct: 61 tggtttaagaatacgtgtattcaaggaaagtac 93
>RF00694;mir-137;AAPN01296459.1/4449-4348 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 15 ttcggtgacgggtattcttgggtggataatacggattacgttgttattgcttaagaatac 74
|||| |||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 15 ttcgatgacgggtattcttgggtacataatacggatggcgctgttattgcttgagaatac 74
Query: 75 gcgtagtcgagg 86
||||||||||||
Sbjct: 75 gcgtagtcgagg 86
>RF00694;mir-137;ABVD01008873.1/1869-1971 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 103
Score = 87.7 bits (44), Expect = 2e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 2 tcctctgactctcttcggtgacgggtattcttgggtggataatacggattac 53
|||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 2 tcctctgactctcttcagtgacggatattcttgggtggataatacggattac 53
>RF00694;mir-137;AAWZ01010620.1/48359-48459 28377:Anolis
carolinensis (green anole)
Length = 101
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggtatataatacagatggcgttgttattgcttgagaatacgcgtagt 81
Query: 82 cgagg 86
||||
Sbjct: 82 tgagg 86
>RF00694;mir-137;CAAE01013623.1/560-657 99883:Tetraodon
nigroviridis
Length = 98
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 81
Query: 82 cgag 85
||||
Sbjct: 82 cgag 85
>RF00694;mir-137;ABPK01025702.1/584-484 57307:Labeotropheus
fuelleborni
Length = 101
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||
Sbjct: 23 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 82
Query: 82 cgag 85
||||
Sbjct: 83 cgag 86
>RF00694;mir-137;BAAF04031315.1/5933-5836 8090:Oryzias latipes
(Japanese medaka)
Length = 98
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatatggatgttattgcttgagaatacgcgtagt 81
Query: 82 cgag 85
||||
Sbjct: 82 cgag 85
>RF00694;mir-137;AAFR03049204.1/9121-9021 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 101
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 20 tgacgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgta 79
|||||||||||||||||| |||||||| || || ||||||||||| ||||||| ||||
Sbjct: 20 tgacgggtattcttgggtagataataccaatggcgctgttattgcttgagaatacacgta 79
Query: 80 gtcgagg 86
|||||||
Sbjct: 80 gtcgagg 86
>RF00694;mir-137;BAAF04063265.1/5995-5897 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtag 80
|||||||||||||||| |||||||| ||| || ||||||||||| |||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtcgatgttattgcttgagaatacgcgtag 80
