miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29173_hsa-mir-1306:mirbase
Length = 85
Score = 141 bits (71), Expect = 8e-35
Identities = 78/79 (98%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gagcagtctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggc 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggc 62
Query: 60 tctggtggtgatggacagt 78
|||||||||||||||||||
Sbjct: 63 tctggtggtgatggacagt 81
>30723_ptr-mir-1306:mirbase
Length = 84
Score = 141 bits (71), Expect = 8e-35
Identities = 78/79 (98%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gagcagtctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggc 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gagcagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggc 61
Query: 60 tctggtggtgatggacagt 78
|||||||||||||||||||
Sbjct: 62 tctggtggtgatggacagt 80
>31364_ppy-mir-1306:mirbase
Length = 85
Score = 141 bits (71), Expect = 8e-35
Identities = 78/79 (98%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gagcagtctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggc 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggc 62
Query: 60 tctggtggtgatggacagt 78
|||||||||||||||||||
Sbjct: 63 tctggtggtgatggacagt 81
>32403_mmu-mir-1306:mirbase
Length = 79
Score = 127 bits (64), Expect = 1e-30
Identities = 74/76 (97%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 cagtctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 62
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
Query: 63 ggtggtgatggacagt 78
||||||||||||||||
Sbjct: 61 ggtggtgatggacagt 76
>32404_mmu-mir-1306:mirbase
Length = 79
Score = 127 bits (64), Expect = 1e-30
Identities = 74/76 (97%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 cagtctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 62
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
Query: 63 ggtggtgatggacagt 78
||||||||||||||||
Sbjct: 61 ggtggtgatggacagt 76
>34145_ssc-mir-1306:mirbase
Length = 80
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 gtctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctgg 64
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
Query: 65 tggtgatggacag 77
|||||||||||||
Sbjct: 61 tggtgatggacag 73
>34146_ssc-mir-1306:mirbase
Length = 80
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 gtctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctgg 64
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
Query: 65 tggtgatggacag 77
|||||||||||||
Sbjct: 61 tggtgatggacag 73
>25675_xla-mir-1306:mirbase
Length = 85
Score = 111 bits (56), Expect = 7e-26
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 ctccaccac-tcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtg 66
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 ctccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtg 69
Query: 67 gtgatggacagt 78
||||||||||||
Sbjct: 70 gtgatggacagt 81
>26047_gga-mir-1306:mirbase
Length = 69
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 16 ctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtggtgatggac 75
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9 ctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtggtgatggac 68
Query: 76 a 76
|
Sbjct: 69 a 69
>26914_cfa-mir-1306:mirbase
Length = 58
Score = 99.6 bits (50), Expect = 3e-22
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 16 ctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtggtg 69
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5 ctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
>33487_bta-mir-1306:mirbase
Length = 58
Score = 99.6 bits (50), Expect = 3e-22
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 16 ctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtggtg 69
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5 ctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
