miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28464_hsa-mir-144:mirbase
Length = 86
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 67
Query: 61 tactagtcc 69
|||||||||
Sbjct: 68 tactagtcc 76
>30236_ptr-mir-144:mirbase
Length = 86
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 67
Query: 61 tactagtcc 69
|||||||||
Sbjct: 68 tactagtcc 76
>30848_ppy-mir-144:mirbase
Length = 86
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 67
Query: 61 tactagtc 68
||||||||
Sbjct: 68 tactagtc 75
>27044_eca-mir-144:mirbase
Length = 66
Score = 131 bits (66), Expect = 7e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 3 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 60
Query: 63 ctagtc 68
||||||
Sbjct: 61 ctagtc 66
>27749_mml-mir-144:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8 ctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatg 67
Query: 61 tactagtcc 69
|||||||||
Sbjct: 68 tactagtcc 76
>28215_mne-mir-144:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8 ctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatg 67
Query: 61 tactagtcc 69
|||||||||
Sbjct: 68 tactagtcc 76
>30099_ppa-mir-144:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 67
Query: 61 tacta 65
|||||
Sbjct: 68 tacta 72
>32750_rno-mir-144:mirbase
Length = 83
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 2 tggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgt 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
Query: 62 actagtc 68
|||||||
Sbjct: 67 actagtc 73
>31877_mmu-mir-144:mirbase
Length = 66
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 3 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 62
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgta 60
Query: 63 ctagtc 68
||||||
Sbjct: 61 ctagtc 66
>33230_bta-mir-144:mirbase
Length = 84
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 5 ctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 64
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 10 ctgggatatcatcatatactgtaagtttgcaacgagacactacagtatagatgatgtact 69
Query: 65 agtcc 69
|||||
Sbjct: 70 agtcc 74
>31501_oan-mir-144:mirbase
Length = 135
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 ctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatg 60
||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 43 ctggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatg 102
Query: 61 tactag 66
||||||
Sbjct: 103 tactag 108
>27392_mdo-mir-144:mirbase
Length = 85
Score = 99.6 bits (50), Expect = 2e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 7 gggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 64
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14 gggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>26718_cfa-mir-144:mirbase
Length = 60
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 8 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtactag 66
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtactag 60
>25964_gga-mir-144:mirbase
Length = 85
Score = 89.7 bits (45), Expect = 2e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 8 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 64
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
>26474_tgu-mir-144:mirbase
Length = 70
Score = 89.7 bits (45), Expect = 2e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 8 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 64
|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
>25793_xtr-mir-144:mirbase
Length = 62
Score = 87.7 bits (44), Expect = 9e-19
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 6 tgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtacta 65
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 3 tgggatatcatcatatactgtaagtttgttttaagacactacagtatagatgatgtacta 62
>34316_dre-mir-144:mirbase
Length = 89
Score = 61.9 bits (31), Expect = 5e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 65
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 13 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtacta 71
>34605_fru-mir-144:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 gagacactacagtatagatgatgtacta 65
||||||||||||||||||||||||||||
Sbjct: 40 gagacactacagtatagatgatgtacta 67
>34752_tni-mir-144:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 65
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 10 ggatatcatcttatactgtaagtttaataaagtgacactacagtatagatgatgtacta 68
