miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 83.8 bits (42), Expect = 4e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctc 74
||||||||||||||| |||||||||||||||||| |||| | |||||||||||| ||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggata-cagtgtgcggaagtgctt 59
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctc 74
||||||||||||||| ||||||||||||| |||| | || ||||||||| ||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgatt-ttgatgccagtgtgcagaaatgctt 59
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 25 aaacatttctgcacaaactagattctggacaccagtgtgc 64
|||||||||||||||||||||||| |||| ||||||||||
Sbjct: 11 aaacatttctgcacaaactagattatggataccagtgtgc 50
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctcctgctac 81
|||||||||||||||||||||| |||| |||| |||| ||||| ||||||| ||||||
Sbjct: 8 tggaaacatttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctac 67
Query: 82 att 84
|||
Sbjct: 68 att 70
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctc 74
||||||||||||||||||| ||||| ||| |||| ||| |||||||||||| ||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctc 74
|||||||||||| || ||||||||||||| || | || | |||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttctgcacaaactagat 47
||||||||||||||||||||||||| |||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagat 33
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 atctagtggaaacatttctgcacaaactaga 46
||||||||||||||| |||||||||||||||
Sbjct: 2 atctagtggaaacatctctgcacaaactaga 32
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 31 ttctgcacaaactagattctggacaccagtgtgcggaaatgctcctgctacatt 84
||||||||||||| || | |||| | |||||||| |||||||| ||||||||||
Sbjct: 17 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;AAWR02026698.1/2322-2389 9796:Equus caballus
(horse)
Length = 68
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 atctagtggaaacatttctgcacaa 40
|||||||||||||||||||||||||
Sbjct: 2 atctagtggaaacatttctgcacaa 26
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 48 tctggacaccagtgtgcggaaatgctcctgcta 80
||||||||||||||||||||| |||| ||||||
Sbjct: 34 tctggacaccagtgtgcggaagtgcttctgcta 66
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 21 gtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctcctgcta 80
||||||||||||||||||| |||| | | || |||||||||| ||| |||| ||||||
Sbjct: 7 gtggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgcta 66
Query: 81 catt 84
||||
Sbjct: 67 catt 70
>RF00693;mir-147;CABD01100245.1/5309-5241 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tctagtggaaacatttctgcacaa 40
||||||||||||||||||||||||
Sbjct: 3 tctagtggaaacatttctgcacaa 26
>RF00693;mir-147;ABRN01368247.1/244-313 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaactagatt 48
|||||||||||||||||||| ||||||
Sbjct: 8 tggaaacatttctgcacaaagtagatt 34
>RF00693;mir-147;AAEX02028076.1/21466-21402 9615:Canis lupus
familiaris (dog)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaacta 44
|||||||||||||||||||||||
Sbjct: 8 tggaaacatttctgcacaaacta 30
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 53/62 (85%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 23 ggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctcctgctaca 82
|||| |||||||||||||||| | | ||||| ||||||||||||||||| ||| ||||
Sbjct: 9 ggaatcatttctgcacaaactcggtactggaa--cagtgtgcggaaatgcttctggtaca 66
Query: 83 tt 84
||
Sbjct: 67 tt 68
>RF00693;mir-147;AANG01591628.1/889-825 9685:Felis catus (domestic
cat)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ggaaacatttctgcacaaacta 44
||||||||||||||||||||||
Sbjct: 9 ggaaacatttctgcacaaacta 30
>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
(northern tree shrew)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctc 74
||||||| | ||| |||||||||||||| ||| | |||| || | |||| |||||||||
Sbjct: 1 aatctagggaaaagatttctgcacaaaccagactttggaaactaatgtgtggaaatgctt 60
Query: 75 ctgctacatt 84
||||| ||||
Sbjct: 61 ctgctgcatt 70
