miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;AADC01102129.1/13137-13054 9606:Homo sapiens
(human)
Length = 84
Score = 73.8 bits (37), Expect = 4e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 11 tttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgta 69
||||||||| || ||||||||||||| ||||| ||||||||||||| ||||||||| |
Sbjct: 2 tttaggttggtgaaaaagtaattgtggcttttgtcattgaaagtaatggcaaaaaccgca 61
Query: 70 attacttttgcac 82
|||||||||||||
Sbjct: 62 attacttttgcac 74
>RF01061;mir-548;AACZ02147953.1/7033-7116 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||||||||||||||||| ||||||||||||||| |||| || |||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggtttttgccattgaaagtaatagtaaaagccataa 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;AANU01270843.1/85523-85605 9544:Macaca mulatta
(rhesus monkey)
Length = 83
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 14 aggttgctgcgaaagtaattgtggttttgccattgaaagtaatcacaaaaaccgtaatta 73
|||||| ||| ||||||||||||||||||| | | |||||||| ||||||||| |||||
Sbjct: 5 aggttggtgcaaaagtaattgtggttttgcaactaaaagtaattgcaaaaaccgcaatta 64
Query: 74 cttttgca 81
||||||||
Sbjct: 65 cttttgca 72
>RF01061;mir-548;AANU01285209.1/57947-57864 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||||| || |||||||| |||||| |||||||| |||||||||| ||
Sbjct: 3 ttaggttggtgcaaaagttatcgtggtttttgccattaaaagtaatgacaaaaaccgcaa 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;CABD01195132.2/4219-4302 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 69.9 bits (35), Expect = 6e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||||||| ||||||| ||||| ||||||||||||||||||| ||||| | | ||
Sbjct: 3 ttaggttgctgcaaaagtaactgtgggttttgccattgaaagtaatagcaaaacctgcaa 62
Query: 71 ttacttttgca 81
|||||||||||
Sbjct: 63 ttacttttgca 73
>RF01061;mir-548;AADB02010442.1/1775967-1775884 9606:Homo sapiens
(human)
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 taggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaat 71
||||||| ||| |||||||||| |||||| |||||| |||| ||| |||||||||| |||
Sbjct: 4 taggttgttgcaaaagtaattgcggtttttgccattcaaagcaatgacaaaaaccgcaat 63
Query: 72 tacttttgca 81
||||||||||
Sbjct: 64 tacttttgca 73
>RF01061;mir-548;AADC01066816.1/395993-395910 9606:Homo sapiens
(human)
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggttttg-ccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| |||||||||| ||||||| |||||||||||||| ||||||||| ||
Sbjct: 3 ttaggttggtgctaaagtaattgcggttttggccattgaaagtaatgtcaaaaaccgcaa 62
Query: 71 ttactt 76
||||||
Sbjct: 63 ttactt 68
>RF01061;mir-548;CABD01007255.1/6013-6096 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 63.9 bits (32), Expect = 4e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
||||| || ||| ||||||||||||||||| |||||| || |||| ||||||||||||
Sbjct: 3 ttaggctggtgcaaaagtaattgtggtttttgccattaaatataatagcaaaaaccgtaa 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;AC074323.4/95680-95597 9606:Homo sapiens (human)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 25 aaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
|||||||||| |||||| |||||| |||||||| ||||||||| ||||||||||||||
Sbjct: 16 aaagtaattgcggtttttgccattaaaagtaatggcaaaaaccgcaattacttttgcac 74
>RF01061;mir-548;AC003681.1/24588-24671 9606:Homo sapiens (human)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 11 tttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgta 69
||||| ||| ||| ||||||||||||||||| |||||| ||| | || ||||||| |||
Sbjct: 2 tttagattggtgcaaaagtaattgtggtttttgccattaaaaatgatggcaaaaactgta 61
Query: 70 attacttttgcactaatct 88
||||||||||||| |||||
Sbjct: 62 attacttttgcaccaatct 80
>RF01061;mir-548;AADC01143663.1/88187-88104 9606:Homo sapiens
(human)
Length = 84
Score = 60.0 bits (30), Expect = 6e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggt-tttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||||||| |||||||| | ||| ||||||||| |||||||| |||| |||| |
Sbjct: 3 ttaggttgctgcaaaagtaatcgcggtctttgccattaaaagtaatggcaaagaccgcga 62
Query: 71 ttacttttgcacta 84
||||||||||||||
Sbjct: 63 ttacttttgcacta 76
>RF01061;mir-548;AADC01015752.1/126987-127070 9606:Homo sapiens
(human)
Length = 84
Score = 60.0 bits (30), Expect = 6e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 taggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaat 71
||||||| ||| || ||||||| |||||| ||||||||||||||| ||||||||| | |
Sbjct: 4 taggttggtgcaaatgtaattgcggtttttgccattgaaagtaatggcaaaaaccgcatt 63
Query: 72 tacttttgcactaa 85
||| ||||||||||
Sbjct: 64 tacgtttgcactaa 77
>RF01061;mir-548;AC202678.6/146907-146824 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 14 aggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaatt 72
|||||| ||| |||||||||| |||||| | ||||||||||||| |||| |||| ||||
Sbjct: 5 aggttggtgcaaaagtaattgcggtttttgtcattgaaagtaatggcaaagaccgcaatt 64
Query: 73 acttttgcac 82
||||||||||
Sbjct: 65 acttttgcac 74
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 58 acaaaaaccgtaattacttttgcactaatctgata 92
|||||||||| |||||||||||||| || ||||||
Sbjct: 35 acaaaaaccgcaattacttttgcaccaacctgata 1
>RF01061;mir-548;ABGA01320162.1/292-375 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 38 ttttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
|||||||||||||| |||| |||||||||| |||||||||||||
Sbjct: 30 ttttgccattgaaattaatgacaaaaaccgctattacttttgcac 74
>RF01061;mir-548;AADC01144176.1/293955-294038 9606:Homo sapiens
(human)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtt-ttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| |||||||||| |||| |||||||||||||||| ||||||||| ||
Sbjct: 3 ttaggttggtgcaaaagtaattgcggttcttgccattgaaagtaacggcaaaaaccgcaa 62
Query: 71 ttacttttg 79
||||||||
Sbjct: 63 ctacttttg 71
>RF01061;mir-548;AADC01022461.1/57990-57907 9606:Homo sapiens
(human)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 11 tttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgta 69
||||||||| ||| |||| |||||||| ||||||| ||| ||||||| ||||| ||| |
Sbjct: 2 tttaggttggtgcaaaaggaattgtgggttttgcctttggaagtaatggcaaaacccgca 61
Query: 70 attacttttgcac 82
|||||||||||||
Sbjct: 62 attacttttgcac 74
>RF01061;mir-548;CABD01355261.2/2635-2552 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
|||||||| || |||||||||| |||||| ||||||||||||||| |||||||| ||
Sbjct: 3 ttaggttggagcaaaagtaattgcggtttttgccattgaaagtaatggcaaaaaccacaa 62
Query: 71 ttacttttg 79
|||||||||
Sbjct: 63 ttacttttg 71
>RF01061;mir-548;ABGA01380877.1/47446-47363 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 16 gttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaattac 74
|||||||| |||||||||| | ||||||||||||||| ||| ||||||| | ||||||
Sbjct: 7 gttgctgcaaaagtaattgcagcttttgccattgaaagcaatggcaaaaactgcaattac 66
Query: 75 ttttgcac 82
||||||||
Sbjct: 67 ttttgcac 74
>RF01061;mir-548;ABSL01029623.1/494-577 9606:Homo sapiens (human)
Length = 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 16 gttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaattac 74
|||| ||| |||||||| |||| |||| |||||||||| ||| ||||||||| ||||||
Sbjct: 78 gttggtgcaaaagtaatcgtggcttttaccattgaaagcaatagcaaaaaccgcaattac 19
Query: 75 ttttgcac 82
||||||||
Sbjct: 18 ttttgcac 11
>RF01061;mir-548;CABD01022860.2/18560-18643 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||||||| ||||||||||||| ||||| |||||| ||||| ||||||| | ||
Sbjct: 3 ttaggttgctgcaaaagtaattgtggtttttgtcattgattgtaatggcaaaaactgcaa 62
Query: 71 ttacttttgcac 82
|| |||||||||
Sbjct: 63 ttgcttttgcac 74
>RF01061;mir-548;CABD01346604.1/3997-4080 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
|||||||| | | ||||||||||||||||| ||||||| |||| || ||||||||| |
Sbjct: 3 ttaggttggtacaaaagtaattgtggtttttgccattgcaagtgatggcaaaaaccgcac 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;AANU01260291.1/17494-17411 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggttt-tgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||| |||||||||||| ||||||| |||||||| |||||| || ||
Sbjct: 3 ttaggttggtgcaaaaataattgtggtttctgccattaaaagtaattgcaaaaatcgcaa 62
Query: 71 ttacttttgcac 82
||| ||||||||
Sbjct: 63 ttatttttgcac 74
>RF01061;mir-548;AL023583.25/57094-57177 9606:Homo sapiens (human)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 13 taggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaat 71
||||||| ||| |||||| ||| || ||||||||||| ||||||| ||||||||| ||
Sbjct: 4 taggttggtgcaaaagtagttgcggcttttgccattgcaagtaatggcaaaaaccgcaac 63
Query: 72 tacttttgcac 82
|||||||||||
Sbjct: 64 tacttttgcac 74
>RF01061;mir-548;CABD01319512.1/496-413 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtt-ttgccattgaaagtaatcacaaaaaccgtaa 70
||||||| ||| |||||||||| |||| ||||| ||||||||||| ||||||||| |
Sbjct: 3 ttaggtttgtgcaaaagtaattgcggttattgccgttgaaagtaatggcaaaaaccgcag 62
Query: 71 ttacttttgca 81
|||||||||||
Sbjct: 63 ttacttttgca 73
>RF01061;mir-548;AANU01106767.1/8226-8143 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 21 tgcgaaagtaattgtggttttg-ccattgaaagtaatcacaaaaaccgtaattacttttg 79
|||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||||||
Sbjct: 12 tgcgaaagtaattgcagtttttaccattaaaagtaatggcaaaaaccgcaattacttttg 71
Query: 80 cac 82
|||
Sbjct: 72 cac 74
>RF01061;mir-548;AANU01123316.1/10409-10492 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 25 aaagtaattgtggttttgcc-attgaaagtaatcacaaaaaccgtaattacttttgcac 82
||||||| ||||||||| || |||||||||||| ||||||| | ||||||||||||||
Sbjct: 16 aaagtaactgtggtttttcccattgaaagtaatggcaaaaactgcaattacttttgcac 74
>RF01061;mir-548;AACZ02184973.1/13727-13644 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 14 aggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaatt 72
|||||| ||| ||||||| ||||||||| ||||| ||||| ||| ||||||||| | ||
Sbjct: 5 aggttggtgcaaaagtaactgtggtttttgccatcgaaagcaatggcaaaaaccgcagtt 64
Query: 73 acttttgcac 82
||||||||||
Sbjct: 65 acttttgcac 74
>RF01061;mir-548;AANU01248525.1/14264-14347 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||||||||| ||||||| ||||| |||| ||| ||||||||| ||
Sbjct: 3 ttaggttggtgcaaaagtaattatggtttttgccatcaaaagcaatggcaaaaaccgcaa 62
Query: 71 ttacttttgcactaatct 88
||||||||| || |||||
Sbjct: 63 ttacttttgtaccaatct 80
>RF01061;mir-548;ABGA01227794.1/7074-6991 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 14 aggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaatt 72
|||||| ||| |||||||||| |||||| |||||||| |||| | ||||||||| ||||
Sbjct: 5 aggttggtgcaaaagtaattgcggtttttgccattgacagtagtggcaaaaaccgcaatt 64
Query: 73 acttttgca 81
| |||||||
Sbjct: 65 agttttgca 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 59 caaaaaccgtaattacttttgcactaatctgata 92
||||||||| |||||||||||||| || ||||||
Sbjct: 34 caaaaaccgcaattacttttgcaccaacctgata 1
>RF01061;mir-548;ABGA01209240.1/4651-4734 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 38 ttttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
|||||||||| |||||||| ||||||| | ||||||||||||||
Sbjct: 30 ttttgccattaaaagtaatgccaaaaactgcaattacttttgcac 74
>RF01061;mir-548;AADA01058244.1/14119-14036 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 25 aaagtaattgtggttttg-ccattgaaagtaatcacaaaaaccgtaattacttttgc 80
|||||||||||| |||| |||||||||||||| |||||| || ||||||||||||
Sbjct: 16 aaagtaattgtgatttttaccattgaaagtaatggcaaaaatcgcaattacttttgc 72
>RF01061;mir-548;AC163751.3/6942-6859 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 38 ttttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
|||||||||||||| |||| ||||||||| ||| ||||||||||
Sbjct: 30 ttttgccattgaaaataatggcaaaaaccgcaatcacttttgcac 74
>RF01061;mir-548;AACZ02012902.1/7610-7693 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||||||| ||||| |||| || |||||||||| |||||||| ||||| ||| ||
Sbjct: 3 ttaggttgctgctaaagtgattgcggtttttgccattaaaagtaatggcaaaagccgcaa 62
Query: 71 ttacttttg 79
| |||||||
Sbjct: 63 tcacttttg 71
>RF01061;mir-548;AC117179.4/116901-116818 9606:Homo sapiens
(human)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 38 ttttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
||||||||||||||||||| |||||||| |||||| |||||||
Sbjct: 55 ttttgccattgaaagtaatggcaaaaaccacaattacgtttgcac 11
>RF01061;mir-548;AADB02001154.1/69220-69137 9606:Homo sapiens
(human)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 63/73 (86%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaa-ccgta 69
|||||||| ||| |||||||| | || ||||||||||||||||||| |||||| |||
Sbjct: 3 ttaggttggtgcaaaagtaatggcgggttttgccattgaaagtaatggcaaaaacccgcc 62
Query: 70 attacttttgcac 82
|||||||||||||
Sbjct: 63 attacttttgcac 75
>RF01061;mir-548;AADC01066814.1/148075-148158 9606:Homo sapiens
(human)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 38 ttttgccattgaaagtaatcacaaaaacc 66
||||||||||||||||||| |||||||||
Sbjct: 30 ttttgccattgaaagtaatgacaaaaacc 58
>RF01061;mir-548;AC117444.6/85961-86044 9606:Homo sapiens (human)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 15 ggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaatta 73
||||| ||| |||||||||||| |||| |||| |||| | ||| ||||||||| |||||
Sbjct: 6 ggttggtgcaaaagtaattgtgattttcgccactgaatgcaatggcaaaaaccgcaatta 65
Query: 74 cttttgcac 82
|||||||||
Sbjct: 66 cttttgcac 74
>RF01061;mir-548;CABD01203916.1/289-206 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 38 ttttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
||||||||||||||||||| |||||| || ||||||||| ||||
Sbjct: 30 ttttgccattgaaagtaatggcaaaaatcgcaattactttggcac 74
>RF01061;mir-548;AANU01296214.1/2804-2721 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 38 ttttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
|||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 55 ttttgccattaaaagtaatgtcaaaacccgcaattacttttgcac 11
>RF01061;mir-548;AADA01051643.1/6626-6709 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||||| ||||| ||||| ||||||||||||||| ||| ||| ||
Sbjct: 3 ttaggttggtgcaaaagtgattgtagtttttgccattgaaagtaatggcaatgaccacaa 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;AC068058.12/13722-13805 9606:Homo sapiens (human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgt-ggttttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| |||||||||||| || ||||||||| || ||| |||| ||||| || ||
Sbjct: 3 ttaggttggtgcgaaagtaatggtgggttttgcctttaaaactaatggcaaaacccacaa 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;AADB02009973.1/796632-796715 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 16 gttgctgcgaaagtaattgtggt-tttgccattgaaagtaatcacaaaaaccgtaattac 74
|||| ||| |||||||| ||||| |||||||||||||||||| |||| ||| |||||
Sbjct: 7 gttggtgcaaaagtaatcgtggtctttgccattgaaagtaatggcaaagaccacgattac 66
Query: 75 ttttgcac 82
||||||||
Sbjct: 67 ttttgcac 74
>RF01061;mir-548;AADC01142453.1/7445-7528 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggttt-tgccattgaaagtaatcacaaaaaccgtaa 70
||||| || ||| |||||||||| |||| ||||| |||||||||| ||| ||||| ||
Sbjct: 3 ttaggctggtgcaaaagtaattgcagtttctgccactgaaagtaatggcaagaaccgcaa 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;AADD01165731.1/6332-6415 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaa 70
||||||| ||| ||||||||||||| |||||||||| |||| ||| || ||||| ||
Sbjct: 82 ttaggttaatgcaaaagtaattgtggcttttgccattaaaagcaatggcagaaaccacaa 23
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 22 ttacttttgcac 11
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggttt-tgccattg 48
|||||||| ||| |||||||||||||||| ||||||||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggtttctgccattg 40
>RF01061;mir-548;ABSL01062835.1/19063-18980 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 12 ttaggttgctgcgaaagtaattgtggttt-tgccattgaaagtaatcacaaaaaccgtaa 70
|||||| | ||| |||||||||| | ||| ||||||| |||||||| |||||||| ||
Sbjct: 82 ttaggtcggtgcaaaagtaattgagatttctgccattaaaagtaatggcaaaaaccacaa 23
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 22 ttacttttgcac 11
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt 41
|||||||| ||| |||||||||||||||||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggtttt 32
>RF01061;mir-548;AC004963.2/156846-156763 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| | ||||||||||| |||||||||| ||||| || |||||| || ||
Sbjct: 3 ttaggttggtgcaacagtaattgtggcttttgccattaaaagtgatgacaaaacccacaa 62
Query: 71 ttacttttgcac 82
||||| ||||||
Sbjct: 63 ttactgttgcac 74
>RF01061;mir-548;AC099678.2/65387-65470 9606:Homo sapiens (human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaacc 66
|||||||| ||| |||||||||||| |||||||||| |||||||| ||||||||
Sbjct: 3 ttaggttggtgcacaagtaattgtggtttttgccatttaaagtaatggcaaaaacc 58
>RF01061;mir-548;CABD01378151.1/10643-10726 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| |||| |||||||| |||||||||||||||| | |||||| | ||
Sbjct: 3 ttaggttggtgcaaaagaaattgtggattttgccattgaaagttacggcaaaaatcacaa 62
Query: 71 ttacttttgcac 82
||||||||||||
Sbjct: 63 ttacttttgcac 74
>RF01061;mir-548;AANU01112255.1/642-725 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaa 70
|||||| | ||| ||||||||||||| ||||| |||| |||||||| ||||| ||| ||
Sbjct: 3 ttaggtgggtgcaaaagtaattgtggtttttgacattaaaagtaatggcaaaagccgcaa 62
Query: 71 ttacttttgcac 82
| ||||||||||
Sbjct: 63 taacttttgcac 74
>RF01061;mir-548;AC198186.3/82008-82091 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 25 aaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaattacttttg 79
|||||||||| |||||| ||||||| || |||| ||||||||| |||||||||||
Sbjct: 16 aaagtaattgcggtttttgccattggaaataatggcaaaaaccgcaattacttttg 71
>RF01061;mir-548;AANU01261834.1/7167-7084 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggttt-tgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| |||||||||||||||| || | || |||||| | ||||||||| ||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggtttgtgtctttaaaagtagtggcaaaaaccgcaa 62
Query: 71 ttacttttgcac 82
|||||||||||
Sbjct: 63 ctacttttgcac 74
>RF01061;mir-548;AANU01124258.1/9508-9425 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtt-ttgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||||||||||||||| ||||| | |||||||| |||||||| ||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggttcttgcctataaaagtaatggcaaaaaccacaa 62
Query: 71 ttacttttgcac 82
|| |||||||||
Sbjct: 63 tttcttttgcac 74
>RF01061;mir-548;AANU01230369.1/6404-6321 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 39 tttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 54 tttgccattaaaagtaatgacaaagaccacaattacttttgcac 11
>RF01061;mir-548;AANU01236941.1/3584-3501 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggttt-tgccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||| |||||| |||| || ||||||||||| | |||||||||| ||
Sbjct: 3 ttaggttggtgcaaaattaattgcagtttatgtcattgaaagtagtgacaaaaaccgcaa 62
Query: 71 ttacttttgcac 82
|| |||||||||
Sbjct: 63 ttgcttttgcac 74
>RF01061;mir-548;AC191392.1/146896-146813 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 13 taggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaat 71
||||||| ||| ||||||| ||||| |||||||||| |||||||| |||| | || |||
Sbjct: 4 taggttggtgccaaagtaactgtgggttttgccattaaaagtaatgacaagacccacaat 63
Query: 72 tacttttgcac 82
|||||| ||||
Sbjct: 64 tactttggcac 74
>RF01061;mir-548;AC111199.4/17434-17350 9606:Homo sapiens (human)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaa 70
|||||||| ||| ||||||||||||||||| ||| | |||||| ||||||||| ||
Sbjct: 3 ttaggttgatgcaaaagtaattgtggtttttgcccattaaagtaggggcaaaaaccgcaa 62
Query: 71 ttacttttgca 81
|||||||||||
Sbjct: 63 ttacttttgca 73
>RF01061;mir-548;AADB02015244.1/579799-579882 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 13 taggttgctgcgaaagtaattgtggtt-ttgccattgaaagtaatcacaaaaaccgtaat 71
||||||| ||| |||||||| ||| || ||||||||||||||||| ||| || | |||
Sbjct: 4 taggttggtgcaaaagtaatcgtgcttgttgccattgaaagtaatggcaacaagcacaat 63
Query: 72 tacttttgcac 82
|||||||||||
Sbjct: 64 tacttttgcac 74
>RF01061;mir-548;AADC01126060.1/253363-253446 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 25 aaagtaattgtggtttt-gccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
|||||||||| |||||| |||||| ||| ||| ||||||||| ||||||||||||||
Sbjct: 16 aaagtaattgcggtttttgccattaaaaacaatggcaaaaaccgcaattacttttgcac 74
>RF01061;mir-548;AC126755.3/45-128 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 13 taggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaat 71
||||||| ||| ||||| ||||||| |||||||||||| | |||| || |||||| |||
Sbjct: 4 taggttggtgcaaaagtgattgtggtttttgccattgagaataatggcagaaaccgcaat 63
Query: 72 tacttttgcac 82
||||||||||
Sbjct: 64 cacttttgcac 74
>RF01061;mir-548;CABD01009254.1/6580-6663 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggttttg 42
|||||||| ||| ||||||||||||||||||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggttttg 33
>RF01061;mir-548;ABGA01014573.1/16804-16721 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaag 52
|||| ||| ||| ||||||||||||| |||||||||||||||
Sbjct: 3 ttagcttggtgcaaaagtaattgtgggttttgccattgaaag 44
>RF01061;mir-548;ABGA01354861.1/8138-8055 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt 41
|||||||| ||| |||||||||||||||||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggtttt 32
>RF01061;mir-548;AACZ02112099.1/25061-25144 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt 41
|||||||| ||| |||||||||||||||||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggtttt 32
>RF01061;mir-548;AACZ02061421.1/862-945 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 41 tgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 33 tgccattaaaagtaatggcaaaaaccacaattacttttgcac 74
>RF01061;mir-548;AADB02001899.1/605621-605538 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 46 ttgaaagtaatcacaaaaaccgtaattacttttgcact 83
||||||||||| ||||||||| ||| |||||||||||
Sbjct: 38 ttgaaagtaatggcaaaaaccgcaatgacttttgcact 75
>RF01061;mir-548;ABSL01068449.1/36486-36403 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 25 aaagtaattgtgg-ttttgccattgaaagtaatcacaaaaaccgtaattacttt 77
||||||||||||| |||||||||| |||||||| |||||| | |||||||||
Sbjct: 16 aaagtaattgtggcttttgccattaaaagtaatggtaaaaactgcaattacttt 69
>RF01061;mir-548;AADB02011915.1/382962-383045 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 37 gttttgccattgaaagtaatcacaaaaaccgtaattacttttgcac 82
|||||||||||||||||||| |||| || ||||||||||||||
Sbjct: 29 gttttgccattgaaagtaatggtaaaactcgcaattacttttgcac 74
>RF01061;mir-548;AADC01094388.1/15092-15175 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaat 56
|||||||| || ||||| ||||||||||| |||||||||||||||
Sbjct: 3 ttaggttggggcaaaagtcattgtggtttttgccattgaaagtaat 48
>RF01061;mir-548;AC121493.1/11246-11329 9606:Homo sapiens (human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 12 ttaggttgctgcgaaagtaattgtggttt-tgccattg 48
|||||||| ||| |||||||||||||||| ||||||||
Sbjct: 82 ttaggttggtgcaaaagtaattgtggtttctgccattg 45
>RF01061;mir-548;CABD01201701.2/1726-1642 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt-gccattgaaagtaat 56
|||||||| ||| | |||| |||||||||| |||||||||||||||
Sbjct: 3 ttaggttggtgcaacagtagttgtggtttttgccattgaaagtaat 48
>RF01061;mir-548;CABD01075799.2/302-219 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtgg-ttttgccattgaaagtaat 56
|||||||| ||| ||||||| || || |||||||||||||||||||
Sbjct: 3 ttaggttggtgcaaaagtaactgcggcttttgccattgaaagtaat 48
>RF01061;mir-548;AANU01290519.1/8633-8716 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgtggtttt 41
|||||||| ||| |||||||||||||||||
Sbjct: 3 ttaggttggtgcaaaagtaattgtggtttt 32
>RF01061;mir-548;AANU01115116.1/14393-14310 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 12 ttaggttgctgcgaaagtaattgt-ggttttgccattgaaagtaat 56
|||||||| ||| |||||||||| ||||||||||||||| |||||
Sbjct: 3 ttaggttggtgcaaaagtaattgcaggttttgccattgaaggtaat 48
