miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;AANU01270843.1/85523-85605 9544:Macaca mulatta
(rhesus monkey)
Length = 83
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 9 tgcaaaagtaattacggtttttgtgattactttcaatggcaaaaccacaattactttcgc 68
||||||||||||| ||||||||| |||||||| | | ||||||||||||||||||| ||
Sbjct: 72 tgcaaaagtaattgcggtttttgcaattacttttagttgcaaaaccacaattacttttgc 13
Query: 69 agcaacct 76
| ||||||
Sbjct: 12 accaacct 5
>RF01061;mir-548;AADC01102129.1/13137-13054 9606:Homo sapiens
(human)
Length = 84
Score = 69.9 bits (35), Expect = 4e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattacttt 65
|||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 74 gtgcaaaagtaattgcggtttttgccattactttcaatgacaaaagccacaattacttt 16
>RF01061;mir-548;AACZ02147953.1/7033-7116 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttc 66
||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||
Sbjct: 74 gtgcaaaagtaattatggcttttactattactttcaatggcaaaaaccacaattactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AANU01285209.1/57947-57864 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttc 66
|||||||||||||| |||||||||| |||||||| |||||| |||||||| || |||||
Sbjct: 74 gtgcaaaagtaattgcggtttttgtcattacttttaatggcaaaaaccacgataactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AADB02010442.1/1775967-1775884 9606:Homo sapiens
(human)
Length = 84
Score = 65.9 bits (33), Expect = 7e-11
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 9 tgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttcg 67
||||||||||||| |||||||||| ||| |||| |||||| |||||| |||||||||| |
Sbjct: 73 tgcaaaagtaattgcggtttttgtcattgctttgaatggcaaaaaccgcaattacttttg 14
Query: 68 cagcaacct 76
|| ||||||
Sbjct: 13 caacaacct 5
>RF01061;mir-548;CABD01195132.2/4219-4302 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 65.9 bits (33), Expect = 7e-11
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 9 tgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttcg 67
||||||||||||| | | ||||| ||||||||||||||||||| ||||| ||||||| |
Sbjct: 73 tgcaaaagtaattgcaggttttgctattactttcaatggcaaaacccacagttacttttg 14
Query: 68 cagcaacct 76
|||||||||
Sbjct: 13 cagcaacct 5
>RF01061;mir-548;AADC01066816.1/395993-395910 9606:Homo sapiens
(human)
Length = 84
Score = 63.9 bits (32), Expect = 3e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 14 aagtaattacggtttttgtgattactttcaatgg-caaaaccacaattactttcgcagca 72
|||||||| ||||||||| |||||||||||||| ||||||| |||||||||| ||| ||
Sbjct: 68 aagtaattgcggtttttgacattactttcaatggccaaaaccgcaattactttagcacca 9
Query: 73 acct 76
||||
Sbjct: 8 acct 5
>RF01061;mir-548;AC074323.4/95680-95597 9606:Homo sapiens (human)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattacttt 65
|||||||||||||| ||||||||| |||||||| |||||| |||||| ||||||||||
Sbjct: 74 gtgcaaaagtaattgcggtttttgccattacttttaatggcaaaaaccgcaattacttt 16
>RF01061;mir-548;CABD01007255.1/6013-6096 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattacttt 65
|||||||||||||||||||||||| |||| || |||||| |||||||||||||||||
Sbjct: 74 gtgcaaaagtaattacggtttttgctattatatttaatggcaaaaaccacaattacttt 16
>RF01061;mir-548;AC202678.6/146907-146824 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttc 66
|||||||||||||| |||| |||| ||||||||||||| | |||||| ||||||||||
Sbjct: 74 gtgcaaaagtaattgcggtctttgccattactttcaatgacaaaaaccgcaattactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgt 32
|||||||||||||| ||||||||||
Sbjct: 11 gtgcaaaagtaattgcggtttttgt 35
>RF01061;mir-548;ABGA01320162.1/292-375 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct: 74 gtgcaaaagtaatagcggtttttgtcattaatttcaatggcaaaa 30
>RF01061;mir-548;AC003681.1/24588-24671 9606:Homo sapiens (human)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 2 agattagtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaatt 60
||||| |||||||||||||||| ||||||| || | ||| |||||| ||||||||||||
Sbjct: 80 agattggtgcaaaagtaattacagtttttgccatcatttttaatggcaaaaaccacaatt 21
Query: 61 acttt 65
|||||
Sbjct: 20 acttt 16
>RF01061;mir-548;AADC01015752.1/126987-127070 9606:Homo sapiens
(human)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 5 ttagtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattact 63
|||||||||| |||| | ||||||||| ||||||||||||||| |||||| |||||||
Sbjct: 77 ttagtgcaaacgtaaatgcggtttttgccattactttcaatggcaaaaaccgcaattaca 18
Query: 64 ttcgcagcaacct 76
|| ||| ||||||
Sbjct: 17 tttgcaccaacct 5
>RF01061;mir-548;ABGA01380877.1/47446-47363 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 56.0 bits (28), Expect = 6e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
|||||||||||||| | ||||||| ||| ||||||||||||||| | ||||||||||
Sbjct: 74 gtgcaaaagtaattgcagtttttgccattgctttcaatggcaaaagctgcaattactttt 15
Query: 67 gcagcaac 74
||||||||
Sbjct: 14 gcagcaac 7
>RF01061;mir-548;AADC01143663.1/88187-88104 9606:Homo sapiens
(human)
Length = 84
Score = 56.0 bits (28), Expect = 6e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 6 tagtgcaaaagtaattacggtttttgtgattactttcaatggcaaa-accacaattactt 64
||||||||||||||| |||| |||| |||||||| ||||||||| ||| | |||||||
Sbjct: 76 tagtgcaaaagtaatcgcggtctttgccattacttttaatggcaaagaccgcgattactt 17
Query: 65 tcgcagcaacct 76
| ||||||||||
Sbjct: 16 ttgcagcaacct 5
>RF01061;mir-548;ABSL01029623.1/494-577 9606:Homo sapiens (human)
Length = 84
Score = 56.0 bits (28), Expect = 6e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
|||||||||||||| ||||||||| ||| |||||||||| |||| |||| ||||||||
Sbjct: 11 gtgcaaaagtaattgcggtttttgctattgctttcaatggtaaaagccacgattactttt 70
Query: 67 gcagcaac 74
||| ||||
Sbjct: 71 gcaccaac 78
>RF01061;mir-548;CABD01355261.2/2635-2552 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 56.0 bits (28), Expect = 6e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 11 caaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattacttt 65
||||||||||| |||||||| ||||||||||||||| |||||| ||||||||||
Sbjct: 71 caaaagtaattgtggtttttgccattactttcaatggcaaaaaccgcaattacttt 16
>RF01061;mir-548;AADC01144176.1/293955-294038 9606:Homo sapiens
(human)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 11 caaaagtaattacggtttttgtgattactttcaatggcaa-aaccacaattactttcgca 69
|||||||| || ||||||||| |||||||||||||||| |||| |||||||||| |||
Sbjct: 71 caaaagtagttgcggtttttgccgttactttcaatggcaagaaccgcaattacttttgca 12
Query: 70 gcaacct 76
||||||
Sbjct: 11 ccaacct 5
>RF01061;mir-548;CABD01346604.1/3997-4080 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattacttt 65
|||||||||||| | ||||||||| || |||| ||||||| |||||||||||||||||
Sbjct: 74 gtgcaaaagtaagtgcggtttttgccatcacttgcaatggcaaaaaccacaattacttt 16
>RF01061;mir-548;AANU01106767.1/8226-8143 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatgg-caaaaccacaattactttc 66
|||||||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 74 gtgcaaaagtaattgcggtttttgccattacttttaatggtaaaaactgcaattactttc 15
Query: 67 gca 69
|||
Sbjct: 14 gca 12
>RF01061;mir-548;AANU01123316.1/10409-10492 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaat-ggcaaaaccacaattacttt 65
|||||||||||||| | ||||||| |||||||||||| || ||||||||| |||||||
Sbjct: 74 gtgcaaaagtaattgcagtttttgccattactttcaatgggaaaaaccacagttacttt 16
>RF01061;mir-548;AACZ02184973.1/13727-13644 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttc 66
|||||||||||| | ||||||||| ||| ||||| ||||| ||||||||| |||||||
Sbjct: 74 gtgcaaaagtaactgcggtttttgccattgctttcgatggcaaaaaccacagttactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AL023583.25/57094-57177 9606:Homo sapiens (human)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
||||||||||| || ||||||||| ||||||| ||||||||||| || ||| ||||||
Sbjct: 74 gtgcaaaagtagttgcggtttttgccattacttgcaatggcaaaagccgcaactactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AADC01022461.1/57990-57907 9606:Homo sapiens
(human)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
|||||||||||||| ||| ||||| ||||||| ||| ||||||| |||||||| ||||
Sbjct: 74 gtgcaaaagtaattgcgggttttgccattacttccaaaggcaaaacccacaattcctttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;CABD01319512.1/496-413 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 9 tgcaaaagtaattacggtttttgtgattactttcaatggcaa-aaccacaattacttt 65
||||||||||| | ||||||||| ||||||||||| ||||| |||| ||||||||||
Sbjct: 73 tgcaaaagtaactgcggtttttgccattactttcaacggcaataaccgcaattacttt 16
>RF01061;mir-548;CABD01022860.2/18560-18643 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
||||||||| |||| | ||||||| ||||| |||||| ||||| |||||||||||||
Sbjct: 74 gtgcaaaagcaattgcagtttttgccattacaatcaatgacaaaaaccacaattactttt 15
Query: 67 gcagcaacct 76
||||||||||
Sbjct: 14 gcagcaacct 5
>RF01061;mir-548;AANU01260291.1/17494-17411 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggca-aaaccacaattactttc 66
|||||||| ||||| || |||||| |||||||| ||||||| |||||||||||| |||
Sbjct: 74 gtgcaaaaataattgcgatttttgcaattacttttaatggcagaaaccacaattattttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;ABGA01227794.1/7074-6991 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 9 tgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttcg 67
||||||| ||||| ||||||||| | |||| |||||||| |||||| |||||||||| |
Sbjct: 73 tgcaaaactaattgcggtttttgccactactgtcaatggcaaaaaccgcaattacttttg 14
Query: 68 cagcaacct 76
|| ||||||
Sbjct: 13 caccaacct 5
>RF01061;mir-548;ABGA01209240.1/4651-4734 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||||||| | ||||||| |||||||| ||||||||||
Sbjct: 74 gtgcaaaagtaattgcagtttttggcattacttttaatggcaaaa 30
>RF01061;mir-548;AADA01058244.1/14119-14036 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 10 gcaaaagtaattacggtttttgtgattactttcaatgg-caaaaccacaattacttt 65
|||||||||||| || |||||| |||||||||||||| |||| ||||||||||||
Sbjct: 72 gcaaaagtaattgcgatttttgccattactttcaatggtaaaaatcacaattacttt 16
>RF01061;mir-548;AC163751.3/6942-6859 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||| ||| ||||||||| |||| ||||||||||||||
Sbjct: 74 gtgcaaaagtgattgcggtttttgccattattttcaatggcaaaa 30
>RF01061;mir-548;AC117179.4/116901-116818 9606:Homo sapiens
(human)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
||||||| |||||| |||||||| |||||||||||||||||||
Sbjct: 11 gtgcaaacgtaattgtggtttttgccattactttcaatggcaaaa 55
>RF01061;mir-548;AADC01066814.1/148075-148158 9606:Homo sapiens
(human)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 24 ggtttttgtgattactttcaatggcaaaa 52
||||||||| |||||||||||||||||||
Sbjct: 58 ggtttttgtcattactttcaatggcaaaa 30
>RF01061;mir-548;AC117444.6/85961-86044 9606:Homo sapiens (human)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttc 66
|||||||||||||| ||||||||| ||| | |||| |||| |||| ||||||||||||
Sbjct: 74 gtgcaaaagtaattgcggtttttgccattgcattcagtggcgaaaatcacaattactttt 15
Query: 67 gcagcaacc 75
||| |||||
Sbjct: 14 gcaccaacc 6
>RF01061;mir-548;CABD01203916.1/289-206 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||| ||||||||| || |||||| |||||||||||||||||||
Sbjct: 74 gtgccaaagtaattgcgatttttgccattactttcaatggcaaaa 30
>RF01061;mir-548;AANU01296214.1/2804-2721 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||||||| ||| ||||| |||||||| ||||||||||
Sbjct: 11 gtgcaaaagtaattgcgggttttgacattacttttaatggcaaaa 55
>RF01061;mir-548;AADB02009973.1/796632-796715 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaa-accacaattactttc 66
||||||||||||| ||| |||| |||||||||||||||||| ||||| ||||||||
Sbjct: 74 gtgcaaaagtaatcgtggtctttgccattactttcaatggcaaagaccacgattactttt 15
Query: 67 gcagcaac 74
||| ||||
Sbjct: 14 gcaccaac 7
>RF01061;mir-548;AADB02001154.1/69220-69137 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacgg-tttttgtgattactttcaatggcaaaacc 54
||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 75 gtgcaaaagtaatggcgggtttttgccattactttcaatggcaaaacc 28
>RF01061;mir-548;AC198186.3/82008-82091 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 11 caaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattacttt 65
||||||||||| ||||||||| |||| || ||||||| |||||| ||||||||||
Sbjct: 71 caaaagtaattgcggtttttgccattatttccaatggcaaaaaccgcaattacttt 16
>RF01061;mir-548;AANU01230369.1/6404-6321 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaa 51
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 11 gtgcaaaagtaattgtggtctttgtcattacttttaatggcaaa 54
>RF01061;mir-548;AANU01248525.1/14264-14347 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 2 agattagtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaatt 60
||||| || ||||||||||| ||||||||| ||| |||| ||||| ||||||| ||||
Sbjct: 80 agattggtacaaaagtaattgcggtttttgccattgcttttgatggcaaaaaccataatt 21
Query: 61 actttcgcagcaacct 76
||||| ||| ||||||
Sbjct: 20 acttttgcaccaacct 5
>RF01061;mir-548;AADC01142453.1/7445-7528 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggca-aaaccacaattacttt 65
|||||||||||||| ||||| ||| |||||||||| ||||| |||| ||||||||||
Sbjct: 74 gtgcaaaagtaattgcggttcttgccattactttcagtggcagaaactgcaattacttt 16
>RF01061;mir-548;AADC01126060.1/253363-253446 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattacttt 65
|||||||||||||| ||||||||| ||| ||| |||||| |||||| ||||||||||
Sbjct: 74 gtgcaaaagtaattgcggtttttgccattgtttttaatggcaaaaaccgcaattacttt 16
>RF01061;mir-548;AADD01165731.1/6332-6415 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattacttt 65
|||||||||||||| ||||| || ||| |||| |||||||||| |||||||||||||
Sbjct: 11 gtgcaaaagtaattgtggtttctgccattgcttttaatggcaaaagccacaattacttt 69
>RF01061;mir-548;ABSL01062835.1/19063-18980 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggca-aaaccacaattacttt 65
|||||||||||||| |||||||| |||||||| ||||||| ||| | ||||||||||
Sbjct: 11 gtgcaaaagtaattgtggtttttgccattacttttaatggcagaaatctcaattacttt 69
>RF01061;mir-548;AANU01112255.1/642-725 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattacttt 65
|||||||||| ||| ||| ||||| |||||||| |||| ||||| |||||||||||||
Sbjct: 74 gtgcaaaagttattgcggcttttgccattacttttaatgtcaaaaaccacaattacttt 16
>RF01061;mir-548;AANU01236941.1/3584-3501 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatg 46
||||||||| |||| |||||||||| | |||||||||||
Sbjct: 74 gtgcaaaagcaattgcggtttttgtcactactttcaatg 36
>RF01061;mir-548;AADA01051643.1/6626-6709 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttc 66
|||||||||||||| ||| ||| ||||||||||||||| ||||| ||||| |||||
Sbjct: 74 gtgcaaaagtaattgtggtcattgccattactttcaatggcaaaaactacaatcactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AC191392.1/146896-146813 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
|||| ||||||||| || | |||| |||||||| |||||||||| ||||| |||||||
Sbjct: 74 gtgccaaagtaattgtgggtcttgtcattacttttaatggcaaaacccacagttactttg 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AACZ02061421.1/862-945 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggca 49
|||||||||||||| |||||||| |||||||| |||||||
Sbjct: 74 gtgcaaaagtaattgtggtttttgccattacttttaatggca 33
>RF01061;mir-548;AC068058.12/13722-13805 9606:Homo sapiens (human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaacc-acaattactttc 66
|||||||||||||| || ||||| |||| ||| || ||||||||| || |||||||||
Sbjct: 74 gtgcaaaagtaattgtgggttttgccattagttttaaaggcaaaacccaccattactttc 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AADB02015244.1/579799-579882 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaa-aaccacaattactttc 66
|||||||||||||| | || ||| ||||||||||||||||| || ||| ||||||||
Sbjct: 74 gtgcaaaagtaattgtgcttgttgccattactttcaatggcaacaagcacgattactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AADB02001899.1/605621-605538 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 7 agtgcaaaagtaattacggtttttgtgattactttcaa 44
||||||||||| ||| ||||||||| |||||||||||
Sbjct: 75 agtgcaaaagtcattgcggtttttgccattactttcaa 38
>RF01061;mir-548;ABSL01068449.1/36486-36403 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 13 aaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattacttt 65
||||||||| | |||||| |||||||| |||||||||| |||||||||||||
Sbjct: 69 aaagtaattgcagtttttaccattacttttaatggcaaaagccacaattacttt 16
>RF01061;mir-548;AADB02011915.1/382962-383045 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaac 53
|||||||||||||| || |||| ||||||||||||||||||||
Sbjct: 74 gtgcaaaagtaattgcgagttttaccattactttcaatggcaaaac 29
>RF01061;mir-548;AC004963.2/156846-156763 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
|||||| ||||||| || |||||| || ||||| |||||||||| ||||||||||| |
Sbjct: 74 gtgcaacagtaattgtgggttttgtcatcacttttaatggcaaaagccacaattactgtt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AC126755.3/45-128 9606:Homo sapiens (human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttc 66
|||||||||| ||| |||||| || |||| | |||||||| ||||||||||| |||||
Sbjct: 74 gtgcaaaagtgattgcggtttctgccattattctcaatggcaaaaaccacaatcactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AC099678.2/65387-65470 9606:Homo sapiens (human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 24 ggtttttgtgattactttcaatggcaaaa-ccacaattactt 64
|||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 58 ggtttttgccattactttaaatggcaaaaaccacaattactt 17
>RF01061;mir-548;CABD01378151.1/10643-10726 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattactttc 66
|||||||||||||| | |||||| | |||||||||||||||| |||||||| ||||
Sbjct: 74 gtgcaaaagtaattgtgatttttgccgtaactttcaatggcaaaatccacaatttctttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AANU01261834.1/7167-7084 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggca-aaaccacaattactttc 66
||||||||||| || ||||||||| | |||||| || | || ||||||||||||||||
Sbjct: 74 gtgcaaaagtagttgcggtttttgccactacttttaaagacacaaaccacaattactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;AANU01124258.1/9508-9425 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaa-aaccacaattactttc 66
||||||||| |||| |||||||| |||||||| | ||||| |||||||||||||||
Sbjct: 74 gtgcaaaagaaattgtggtttttgccattacttttataggcaagaaccacaattactttt 15
Query: 67 gcagcaacct 76
||| ||||||
Sbjct: 14 gcaccaacct 5
>RF01061;mir-548;ABGA01014573.1/16804-16721 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 38 ctttcaatggcaaaa-ccacaattacttt 65
||||||||||||||| |||||||||||||
Sbjct: 44 ctttcaatggcaaaacccacaattacttt 16
>RF01061;mir-548;ABGA01258901.1/11428-11345 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||||||| | ||||| || ||| | |||||||||||||
Sbjct: 74 gtgcaaaagtaattgcagttttggtcattgccttcaatggcaaaa 30
>RF01061;mir-548;BS000196.1/176390-176307 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||| | | || |||||| |||||||||||||||||||
Sbjct: 74 gtgcaaaagtcactgcgatttttgccattactttcaatggcaaaa 30
>RF01061;mir-548;AACZ02112867.1/29891-29976 9598:Pan troglodytes
(chimpanzee)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 7 agtgcaaaagtaattacggtttttg 31
|||||||||||||| ||||||||||
Sbjct: 77 agtgcaaaagtaatcacggtttttg 53
>RF01061;mir-548;AADA01152819.1/20739-20822 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||| |||| || | ||||||| |||||||||||||||||||
Sbjct: 74 gtgcaagagtagttgcagtttttgccattactttcaatggcaaaa 30
>RF01061;mir-548;AC111199.4/17434-17350 9606:Homo sapiens (human)
Length = 85
Score = 42.1 bits (21), Expect = 0.001
Identities = 58/69 (84%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 9 tgcaaaagtaattacggtttttgtgattactttcaatggc-aaaaccacaattactttcg 67
||||||||||||| ||||||||| |||||| | ||| ||||||||||||||||| |
Sbjct: 73 tgcaaaagtaattgcggtttttgcccctactttaatgggcaaaaaccacaattacttttg 14
Query: 68 cagcaacct 76
|| ||||||
Sbjct: 13 catcaacct 5
>RF01061;mir-548;AADC01023522.1/7145-7062 9606:Homo sapiens
(human)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
||||||| |||||| | || |||| |||||||||||||||||||
Sbjct: 74 gtgcaaaggtaattgcagtatttgccattactttcaatggcaaaa 30
>RF01061;mir-548;AADC01134614.1/198131-198048 9606:Homo sapiens
(human)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||||||| | ||| || |||||||||||||||||||
Sbjct: 74 gtgcaaaagtaattgcaatttctgccattactttcaatggcaaaa 30
>RF01061;mir-548;AADB02016072.1/820085-820002 9606:Homo sapiens
(human)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
||||||||||||| || ||||||| |||||| ||| ||||||||
Sbjct: 74 gtgcaaaagtaatcactgtttttgccattactctcagtggcaaaa 30
>RF01061;mir-548;AADC01054028.1/147-64 9606:Homo sapiens (human)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||||||| | |||||| |||||||| ||||||||||
Sbjct: 11 gtgcaaaagtaattgtgctttttgccattacttttaatggcaaaa 55
>RF01061;mir-548;ABSL01074616.1/61238-61321 9606:Homo sapiens
(human)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||||||| | |||||| |||||| ||||||||||||
Sbjct: 74 gtgcaaaagtaattgcagtttttaccattactgtcaatggcaaaa 30
>RF01061;mir-548;AADC01094388.1/15092-15175 9606:Homo sapiens
(human)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 34 attactttcaatggc-aaaaccacaattacttt 65
||||||||||||||| ||||||||||| |||||
Sbjct: 48 attactttcaatggcaaaaaccacaatgacttt 16
>RF01061;mir-548;CABD01009254.1/6580-6663 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 48 caaaaccacaattactttcgcagcaacct 76
|||||||||||||||||| ||| ||||||
Sbjct: 33 caaaaccacaattacttttgcaccaacct 5
>RF01061;mir-548;CABD01524540.2/42-125 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 10 gcaaaagtaattacggtttttgtgattactttcaatggcaaaa-ccacaattacttt 65
|||| ||||||| ||||||||| || |||| |||||||||| |||||||||||||
Sbjct: 72 gcaacagtaattgcggtttttgccatcgcttttaatggcaaaaaccacaattacttt 16
>RF01061;mir-548;CABD01343912.1/1154-1071 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 8 gtgcaaaagtaattacggtttttgtgattactttcaatggcaaaa 52
|||||||||||||| ||||||||| ||| || |||||||||||
Sbjct: 11 gtgcaaaagtaattgcggtttttgccattcctgccaatggcaaaa 55
