miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;AC187360.3/56002-56085 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 52 taatggcaaaaactgcaattacgttcacaccaaccta 88
|||| ||||||||||||||||| ||| ||||||||||
Sbjct: 45 taatagcaaaaactgcaattactttcgcaccaaccta 81
>RF01061;mir-548;AANU01296214.1/2804-2721 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 ttttaatggcaaaaactgcaattac 73
|||||||||||||||||||||||||
Sbjct: 42 ttttaatggcaaaaactgcaattac 66
>RF01061;mir-548;ABBV01001495.1/1250-1333 447454:candidate
division TM7 single-cell isolate TM7a
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 49 ttttaatggcaaaaactgcaattac 73
|||||||||||||||||||||||||
Sbjct: 43 ttttaatggcaaaaactgcaattac 19
>RF01061;mir-548;AL008721.1/97595-97678 9606:Homo sapiens (human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 49 ttttaatggcaaaaactgcaattacgttcacaccaaccta 88
|||||||||||||| |||||||||| || ||||||||||
Sbjct: 43 ttttaatggcaaaagctgcaattacttttgcaccaaccta 4
>RF01061;mir-548;AC090451.6/112413-112496 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 49 ttttaatggcaaaaactgcaattacgttcacaccaaccta 88
|||||||||||||||||||||| || || ||||||||||
Sbjct: 42 ttttaatggcaaaaactgcaatcacttttgcaccaaccta 81
>RF01061;mir-548;AANU01015630.1/1898-1815 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 49 ttttaatggcaaaaactgcaattacgttcacaccaaccta 88
|||||||||||||||| |||||||| || ||| |||||||
Sbjct: 43 ttttaatggcaaaaacagcaattacttttacaacaaccta 4
>RF01061;mir-548;AANU01106767.1/8226-8143 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 49 ttttaatggcaaaaactgcaattacgttcacaccaaccta 88
||||||||| ||||||||||||||| ||| |||| |||||
Sbjct: 43 ttttaatggtaaaaactgcaattactttcgcacctaccta 4
>RF01061;mir-548;AANU01170885.1/1-85 9544:Macaca mulatta (rhesus
monkey)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 49 ttttaatggcaaaaactgcaattacgttcacaccaaccta 88
|||||||||||||||| |||||||| || ||||||||||
Sbjct: 43 ttttaatggcaaaaaccgcaattacttttgcaccaaccta 4
>RF01061;mir-548;ABGA01380877.1/47446-47363 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 aatggcaaaaactgcaattacgttcacaccaacct 87
||||||||||||||||||||| || |||||||||
Sbjct: 46 aatggcaaaaactgcaattacttttgcaccaacct 80
>RF01061;mir-548;AADC01023522.1/7145-7062 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 52 taatggcaaaaactgcaattacgttcacaccaacctata 90
|||||||||| ||||||||||| || ||||||||||||
Sbjct: 45 taatggcaaatactgcaattacctttgcaccaacctata 83
>RF01061;mir-548;AADC01102129.1/13137-13054 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 52 taatggcaaaaactgcaattacgttcacaccaacctata 90
||||||||||||| |||||||| || ||||||||||||
Sbjct: 45 taatggcaaaaaccgcaattacttttgcaccaacctata 83
>RF01061;mir-548;ABGA01086348.1/10388-10471 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 51 ttaatggcaaaaactgcaattacgttcacaccaaccta 88
|||||||||||||| |||||||| || ||||||||||
Sbjct: 41 ttaatggcaaaaaccgcaattacatttgcaccaaccta 4
>RF01061;mir-548;ABGA01209240.1/4651-4734 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 52 taatggcaaaaactgcaattacgttcacaccaacctat 89
||||| |||||||||||||||| || |||||||||||
Sbjct: 45 taatgccaaaaactgcaattacttttgcaccaacctat 82
>RF01061;mir-548;AADC01117423.1/979850-979767 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 49 ttttaatggcaaaaactgcaattacgttcacaccaacc 86
|||||||||||||||| |||||||| || ||||||||
Sbjct: 43 ttttaatggcaaaaaccgcaattacttttgcaccaacc 6
>RF01061;mir-548;AADC01015752.1/126987-127070 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 53 aatggcaaaaactgcaattacgttcacaccaacctata 90
|||||||||||| |||||||| || ||||||||||||
Sbjct: 39 aatggcaaaaaccgcaattacatttgcaccaacctata 2
>RF01061;mir-548;ABBA01074990.1/78349-78432 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taatggcaaaaactgcaattac 73
||||||||||||||||||||||
Sbjct: 45 taatggcaaaaactgcaattac 66
>RF01061;mir-548;CABD01616280.2/84-1 9595:Gorilla gorilla gorilla
(Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 aggtttgtgcaaaagtaatcacagttttta 41
||||| ||||||||||||| ||||||||||
Sbjct: 5 aggttggtgcaaaagtaattacagttttta 34
>RF01061;mir-548;AANU01123316.1/10409-10492 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taatggcaaaaactgcaattac 73
||||||||||||||||||||||
Sbjct: 45 taatggcaaaaactgcaattac 66
>RF01061;mir-548;AANU01283759.1/9595-9678 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taatggcaaaaactgcaattac 73
||||||||||||||||||||||
Sbjct: 45 taatggcaaaaactgcaattac 66
