miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28848_hsa-mir-548q:mirbase
Length = 100
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaatat 97
||||||||| ||||||||||||||||||||||||
Sbjct: 34 aaaaaccgccattacttttgcaccagcctaatat 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 27 ggtgtaaaagcaatggcagtttttgccattac 58
|||| ||||| |||||| ||||||||||||||
Sbjct: 11 ggtgcaaaagtaatggcggtttttgccattac 42
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||||||||||||||||||| |||||||
Sbjct: 43 aaaaaccgcaattacttttgcaccaacctaata 11
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||||||||||||||||||| |||||||
Sbjct: 43 aaaaaccgcaattacttttgcaccaacctaata 11
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||||||||||||||||||| |||||||
Sbjct: 72 aaaaaccgcaattacttttgcaccaacctaata 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||| ||||||||||||||| |||||||
Sbjct: 35 aaaaaccgcgattacttttgcaccaacctaata 3
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||||||||||||||||||| |||||||
Sbjct: 55 aaaaaccgcaattacttttgcaccaacctaata 87
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||||||||||||||||||| |||||||
Sbjct: 43 aaaaaccgcaattacttttgcaccaacctaata 11
>28799_hsa-mir-548aa-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaatat 97
||||||| ||||||||||||||||| ||||||||
Sbjct: 55 aaaaaccacaattacttttgcaccaacctaatat 88
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 9e-08
Identities = 65/78 (83%), Gaps = 5/78 (6%)
Strand = Plus / Plus
Query: 27 ggtgtaaaagcaatggcagtttttgccattacattt-----taaaaaccgcaattacttt 81
|||| ||||| ||| ||||||||||| ||||| ||| ||||||| |||||||||||
Sbjct: 14 ggtgcaaaagtaattgcagtttttgctattacttttaatggtaaaaactgcaattacttt 73
Query: 82 tgcaccagcctaatattt 99
| ||||| ||||||||||
Sbjct: 74 tacaccaacctaatattt 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||||| |||||||||||||||||| |||||||
Sbjct: 37 aaaaactgcaattacttttgcaccaacctaata 5
>28820_hsa-mir-548d-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaatat 97
||||||| ||||||||||||||||| ||||||||
Sbjct: 43 aaaaaccacaattacttttgcaccaacctaatat 10
>28821_hsa-mir-548d-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaatat 97
||||||| ||||||||||||||||| ||||||||
Sbjct: 43 aaaaaccacaattacttttgcaccaacctaatat 10
>28814_hsa-mir-548am:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacca 88
|||||||||||||||||||||||||
Sbjct: 28 aaaaaccgcaattacttttgcacca 4
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||| ||||||||||||||| |||||||
Sbjct: 34 aaaaaccgcgattacttttgcaccaacctaata 2
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 caattacttttgcaccagcctaatat 97
||||||||||||||||| ||||||||
Sbjct: 61 caattacttttgcaccaacctaatat 86
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||||| ||||||||||||||| |||||||
Sbjct: 47 aaaaaccgcgattacttttgcaccaacctaata 15
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
|||||| |||||||||||||||||| |||||
Sbjct: 66 aaaaactgcaattacttttgcaccaacctaa 96
>28836_hsa-mir-548i-1:mirbase
Length = 149
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||||||||||||||||| |||||||
Sbjct: 57 aaaatccgcaattacttttgcaccaacctaata 25
>28846_hsa-mir-548o-2:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacca 88
|||||||||||||||||||||||||
Sbjct: 25 aaaaaccgcaattacttttgcacca 1
>30477_ptr-mir-548i-1:mirbase
Length = 148
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||||||||||||||||| |||||||
Sbjct: 57 aaaatccgcaattacttttgcaccaacctaata 25
>30478_ptr-mir-548i-2:mirbase
Length = 148
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||||||||||||||||| |||||||
Sbjct: 57 aaaatccgcaattacttttgcaccaacctaata 25
>30480_ptr-mir-548i-4:mirbase
Length = 148
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||||||||||||||||| |||||||
Sbjct: 57 aaaatccgcaattacttttgcaccaacctaata 25
>30481_ptr-mir-548i-5:mirbase
Length = 148
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||||||||||||||||| |||||||
Sbjct: 56 aaaatccgcaattacttttgcaccaacctaata 24
>30482_ptr-mir-548i-6:mirbase
Length = 148
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||||||||||||||||| |||||||
Sbjct: 56 aaaatccgcaattacttttgcaccaacctaata 24
>28815_hsa-mir-548an:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaat 95
||||||||||||| ||||||||||| ||||||
Sbjct: 52 aaaaaccgcaattccttttgcaccaacctaat 83
>28826_hsa-mir-548f-2:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaatattt 99
|||||| | |||||||||||||||| ||||||||||
Sbjct: 59 aaaaactgtaattacttttgcaccaacctaatattt 94
>28852_hsa-mir-548v:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttacttttgcaccagcctaatatt 98
||||||||||||||||||||||||
Sbjct: 57 ttacttttgcaccagcctaatatt 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 aaaaccgcaattacttttgc 84
||||||||||||||||||||
Sbjct: 34 aaaaccgcaattacttttgc 15
>28002_mml-mir-548f:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
|||| |||||||||||||||||||| |||||
Sbjct: 33 aaaatccgcaattacttttgcaccaacctaa 3
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
||||||| ||||||||||||||||| |||||
Sbjct: 55 aaaaaccacaattacttttgcaccaacctaa 85
>28803_hsa-mir-548ad:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
||||||| ||||||||||||||||| |||||
Sbjct: 34 aaaaaccacaattacttttgcaccaacctaa 4
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
||||||| ||||||||||||||||| |||||
Sbjct: 43 aaaaaccacaattacttttgcaccaacctaa 13
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
||||||| ||||||||||||||||| |||||
Sbjct: 43 aaaaaccacaattacttttgcaccaacctaa 13
>28840_hsa-mir-548j:mirbase
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 68 accgcaattacttttgcaccagc 90
|||||||||||||||||||||||
Sbjct: 43 accgcaattacttttgcaccagc 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 attacttttgcaccagccta 93
||||||||||||||||||||
Sbjct: 75 attacttttgcaccagccta 94
>28844_hsa-mir-548n:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
|||| |||||||||||||||||||| |||||
Sbjct: 45 aaaacccgcaattacttttgcaccaacctaa 75
>30479_ptr-mir-548i-3:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaa 94
|||| |||||||||||||||||||| |||||
Sbjct: 56 aaaatccgcaattacttttgcaccaacctaa 26
>30483_ptr-mir-548j:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 68 accgcaattacttttgcaccagc 90
|||||||||||||||||||||||
Sbjct: 43 accgcaattacttttgcaccagc 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 attacttttgcaccagccta 93
||||||||||||||||||||
Sbjct: 75 attacttttgcaccagccta 94
>27999_mml-mir-548d:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 67 aaccgcaattacttttgcaccagcctaata 96
|||| ||||||||||||||||| |||||||
Sbjct: 40 aaccacaattacttttgcaccaacctaata 11
>28000_mml-mir-548d:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 67 aaccgcaattacttttgcaccagcctaata 96
|||| ||||||||||||||||| |||||||
Sbjct: 40 aaccacaattacttttgcaccaacctaata 11
>27996_mml-mir-548a:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacca 88
||||||| |||||||||||||||||
Sbjct: 43 aaaaaccacaattacttttgcacca 19
>27998_mml-mir-548c:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||| |||||||||||||| || |||||||
Sbjct: 40 aaaaaccccaattacttttgcatcaacctaata 8
>28796_hsa-mir-548a-2:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||| ||||||||||||||| | |||||||
Sbjct: 42 aaaaaccccaattacttttgcacaaacctaata 10
>28802_hsa-mir-548ac:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||| |||| |||||||||||| |||||||
Sbjct: 34 aaaaaccacaataacttttgcaccaacctaata 2
>28812_hsa-mir-548ak:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 aaaaccgcaattacttttgca 85
|||||||||||||||||||||
Sbjct: 36 aaaaccgcaattacttttgca 56
>28827_hsa-mir-548f-3:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||||| | |||||||||||||||| |||||||
Sbjct: 54 aaaaactgtaattacttttgcaccaacctaata 86
>28828_hsa-mir-548f-4:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
||||||| | ||||||||||||||| |||||||
Sbjct: 44 aaaaaccactattacttttgcaccaacctaata 12
>28837_hsa-mir-548i-2:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacca 88
|||| ||||||||||||||||||||
Sbjct: 57 aaaatccgcaattacttttgcacca 33
>28838_hsa-mir-548i-3:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||||||||||||||| | |||||||
Sbjct: 57 aaaatccgcaattacttttgcacaaacctaata 25
>28839_hsa-mir-548i-4:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacca 88
|||| ||||||||||||||||||||
Sbjct: 29 aaaatccgcaattacttttgcacca 5
>28842_hsa-mir-548l:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||| ||||||||||||| |||||||
Sbjct: 33 aaaacccgcaaatacttttgcaccaacctaata 1
>28850_hsa-mir-548t:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcacca 88
||||||| |||||||||||||||||
Sbjct: 46 aaaaaccacaattacttttgcacca 70
>28853_hsa-mir-548w:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacca 88
|||||||||| ||||||||||||||
Sbjct: 28 aaaaaccgcagttacttttgcacca 4
>30470_ptr-mir-548a-1:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacca 88
||||||| |||||||||||||||||
Sbjct: 42 aaaaaccacaattacttttgcacca 18
>30474_ptr-mir-548f-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||||| | |||||||||||||||| |||||||
Sbjct: 48 aaaaactgtaattacttttgcaccaacctaata 80
>30475_ptr-mir-548f-2:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||||| | |||||||||||||||| |||||||
Sbjct: 54 aaaaactgtaattacttttgcaccaacctaata 86
>30485_ptr-mir-548l:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcaccagcctaata 96
|||| |||||| ||||||||||||| |||||||
Sbjct: 33 aaaacccgcaaatacttttgcaccaacctaata 1
>28001_mml-mir-548e:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 70 cgcaattacttttgcaccagccta 93
||||||||||||||||||| ||||
Sbjct: 37 cgcaattacttttgcaccaaccta 14
>28805_hsa-mir-548ae-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 27 ggtgtaaaagcaatggcagtttttgccattac 58
||||| |||| ||| |||||||||||||||||
Sbjct: 67 ggtgtgaaagtaattgcagtttttgccattac 36
>28808_hsa-mir-548ah:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 64 aaaaaccgcaattacttttgcaccagcc 91
|||||| ||| |||||||||||||||||
Sbjct: 48 aaaaactgcagttacttttgcaccagcc 75
>28813_hsa-mir-548al:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacc 87
|||||| |||||||||||||||||
Sbjct: 28 aaaaacagcaattacttttgcacc 5
>28831_hsa-mir-548h-1:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacc 87
||||||||| ||||||||||||||
Sbjct: 39 aaaaaccgcgattacttttgcacc 16
>30476_ptr-mir-548h:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 64 aaaaaccgcaattacttttgcacc 87
||||||||| ||||||||||||||
Sbjct: 39 aaaaaccgcgattacttttgcacc 16
