miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;CABD01155376.1/1695-1778 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 56 atgccaaaagctacagttacttttgcaccagcctaata 93
||||||||| || ||||||||||||||||| |||||||
Sbjct: 47 atgccaaaaactgcagttacttttgcaccaacctaata 84
>RF01061;mir-548;CABD01355261.2/2635-2552 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 23 ggtttgagcaaaagtaattgcggtttt 49
|||| ||||||||||||||||||||||
Sbjct: 6 ggttggagcaaaagtaattgcggtttt 32
>RF01061;mir-548;AANU01123316.1/10409-10492 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 68 acagttacttttgcaccagccta 90
|||||||||||||||||||||||
Sbjct: 26 acagttacttttgcaccagccta 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ttacttttgcaccagcctaata 93
||||||||||||||||||||||
Sbjct: 63 ttacttttgcaccagcctaata 84
>RF01061;mir-548;AADC01142453.1/7445-7528 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 72 ttacttttgcaccagcctaata 93
||||||||||||||||||||||
Sbjct: 22 ttacttttgcaccagcctaata 1
>RF01061;mir-548;AADC01126060.1/253363-253446 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ttacttttgcaccagcctaata 93
||||||||||||||||||||||
Sbjct: 63 ttacttttgcaccagcctaata 84
>RF01061;mir-548;CABD01117548.1/2434-2351 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ttacttttgcaccagcctaata 93
||||||||||||||||||||||
Sbjct: 63 ttacttttgcaccagcctaata 84
>RF01061;mir-548;CABD01075799.2/302-219 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 60 caaaagctacagttacttttgcaccagcctaata 93
||||||| ||||||||||||||||| |||||||
Sbjct: 34 caaaagccgcagttacttttgcaccaacctaata 1
>RF01061;mir-548;CABD01007255.1/6013-6096 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 72 ttacttttgcaccagcctaata 93
||||||||||||||||||||||
Sbjct: 22 ttacttttgcaccagcctaata 1
>RF01061;mir-548;AANU01106767.1/8226-8143 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ttacttttgcaccagcctaata 93
||||||||||||||||||||||
Sbjct: 63 ttacttttgcaccagcctaata 84
>RF01061;mir-548;AANU01255888.1/15264-15181 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 caaaagctacagttacttttgcacca 85
||||||| ||||||||||||||||||
Sbjct: 51 caaaagccacagttacttttgcacca 76
